Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACAACATATCAGGCATGGAGAATGTCGAACAGCATGAACAGGTGGATGGAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttcacatctaatatttctttattaggaaacatctaaatgctgaattccccaaacttgtgcatttaattatgtatatttattttttgaatttttctatag

Basic information

species Vitis vinifera
transcript Vv14s0006g02010.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110391364|gb|EC956333.1|EC956333
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|34416304|gb|CF415058.1|CF415058
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110374310|gb|EC939449.1|EC939449
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110419753|gb|EC986002.1|EC986002
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110727608|gb|EE104559.1|EE104559
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAAGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|34415263|gb|CF414017.1|CF414017
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCC-AGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110730829|gb|EE108353.1|EE108353
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110382977|gb|EC947311.1|EC947311
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110377450|gb|EC942515.1|EC942515
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110420660|gb|EC986936.1|EC986936
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110691516|gb|EE069706.1|EE069706
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110687340|gb|EE064675.1|EE064675
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110687110|gb|EE064235.1|EE064235
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110379202|gb|EC944382.1|EC944382
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110426370|gb|EC992776.1|EC992776
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
EST: gi|110378112|gb|EC943228.1|EC943228
EST:     GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAG                         GAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA
genomic: GAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttca ... ttttctatagGAGGCAGCTGTTAAGAAGAGGTATGGAGGAATTATGCCCAAGAAACCACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACAACATATCAGGCATGGAGAATGTCGAACAGCATGAACAGGTGGATGGAAATGGCCCTGACAATGCTGAAAAATCAATGCCTTCCTCCCAAGAGGAGgttgtcttcacatctaatatttctttattaggaaacatctaaatgctgaattccccaaacttgtgcatttaattatgtatatttattttttgaatttttctatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG