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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaaactctcttcttctttctcttcataaatcgaccgttttttattgttcttttctagttgtctcattttcttctctccctttccag

Basic information

species Vitis vinifera
transcript Vv13s0084g00620.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G057329_T01 (Zea mays), 5'ss of exon 3
AAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttc-----ctccaaactctcttcttctttctcttcataaatcgacc--gttttttatt--gttcttttctagttgtctcattttcttctctccctttccag
||||  ||  || ||    ||||| ||||| ||||| ||||| || || |||||||||||||||||||||| |||||| ||  | ||||||      |  || |||     ||||   |  || || | |   |   | |||| |    ||  | | ||||   |   ||||   | | |   | | || 
AAAAAATGCTTTGCCACAAGGTTATAAGGGCTGCCAATTCCATAGAGTGATCAAAGATTTCATGATTCAGGGTGGTGACTTCTTGAAGgtttgtatgccacagactagtagcttcaaccattttattatttagcatagattttaacccagtgttatcctaga-attaaatttgtgtatatatgtattca-

upper sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G26260.1 (Glycine max), 5'ss of exon 3
AAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGg-----ttcctccaaactctcttcttctttctcttcataaatcgaccgttttttattgttcttttctagttgtctcattttcttctctccctttccag--
 ||||| ||| | ||||||||||||||||| || || || || || || || || ||||| ||||||||||||||||||||||| ||||     |||        | | |  ||   | | |   |   |  | |    || ||     |    ||        |   | |    ||| ||| ||   
GAAAGCAGGACTGCCTGTTGGTTACAAGGGTTGTCAATTTCATAGAGTTATTAAGGATTTTATGATTCAGGCTGGTGATTTTGTAAAGgtactgttctggtgtggtttatctttgactttttctgtttgtgtatcaacattcatgaaaataaaataagctgagtacactttatggtccatttgcatgg

upper sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G11960.1 (Glycine max), 5'ss of exon 3
AAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcc-tccaaactctcttcttctttctcttcataaatcgac--cgttttttattgttcttttctagttgtctcattttcttctctccctttccag----
 ||||| ||| | ||||||||||||||||| || || || || || || || || ||||| ||||||||||| ||||||||||| ||||| |  | |        ||  |||||  |||  |   |      |    || ||     |    ||        |   | |    ||| ||| ||     
GAAAGCAGGACTGCCTGTTGGTTACAAGGGTTGTCAATTTCATAGAGTTATTAAGGATTTTATGATTCAGGCCGGTGATTTTGTAAAGgtactgttctggtctggtttatctttgactttgtctgtttgtgtcaacattcatgaaaataaaataagctgagtacactttatggtccatttgcatgtct

upper sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G37190.1 (Glycine max), 5'ss of exon 3
AAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcc-tccaaactctcttcttctttctcttcataaatcgaccgttttttattgttcttttctagttgtct-cattttcttctctccctttccag--------
 ||||  ||||| ||||||||||||||||  || || || || || || || || ||||| |||||||||| |||||||||||| ||||| |  ||     | | ||   |||| |||   |   || ||  ||  | |   |   ||   || ||  | || ||| |  ||      |   |        
GAAAGTAGGATTGCCTGTTGGTTACAAGGCTTGTCAATTTCATAGAGTGATTAAGGATTTTATGATTCAGGATGGTGATTTTGTAAAGgtactatctggtttatatttgactttatctgtttgtgtcaac-attcatgaaaataaatta--agctgagtacactttatggtccatacgtagggcttgatct

upper sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G38730.1 (Arabidopsis thaliana), 5'ss of exon 2
AAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaaactctcttcttctttctcttcataaatcgaccgttttttattgttcttttctagttgtctcattttcttctctccctttccag----------------------------------------------------
||||||||||   ||  |||||||||| | ||| ||||| ||||| |||||||||||||| ||| ||||   |||||||||| | |||||   | |    |  |||||| |   || |||    | ||  | || |  | |||||    | |   |  | |||  ||||||   ||    |                                                    
AAAAGCTGGAAAGCCGCTTGGTTACAAAGAATGTCAGTTTCACAGAGTCATCAAAGATTTTATGGTTCAAAGTGGTGATTTTCTTAAGgtcagtaccc-tttacttcttataaatcctcacttcttgattgcttatgttggttctcaattggcactggcttttagttctcttgtttgtgtgttcttggttcgttacttaaatctcttcttactgcattatctaatttgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110689345|gb|EE065486.1|EE065486
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|110369676|gb|EC933841.1|EC933841
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTTGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|32459581|gb|CD800755.1|CD800755
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|30330499|gb|CD013761.1|CD013761
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTTGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|30330447|gb|CD013709.1|CD013709
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTTGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|71890647|gb|DT039702.1|DT039702
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTTGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|27586714|gb|CB009409.1|CB009409
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTTGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|110397718|gb|EC963561.1|EC963561
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTTGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|110377315|gb|EC942381.1|EC942381
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTTGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|71875212|gb|DT024267.1|DT024267
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTTGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|71871923|gb|DT020978.1|DT020978
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|110421609|gb|EC987908.1|EC987908
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|110408091|gb|EC973714.1|EC973714
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTTGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|32459126|gb|CD800300.1|CD800300
EST:     CACAGGGTCATCAAAGAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTTGAGGATGAA
genomic: CACAGGGTCATC-AA-AGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA
EST: gi|71876171|gb|DT025226.1|DT025226
EST:     TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAG                         GGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTTGAGGATGAA
genomic: TCCACAGGGTCATCAAAGATTTCATGATTCAGGCTGGTGATTTTGTCAAGgttcctccaa ... ccctttccagGGTGATGGTAGTGGATGCGTTTCCATCTATGGAAGCAAGTTCGAGGATGAA