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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTTAGCACCACAGGGGCAGTGGAAGGAGCCCATTTCATTTCAACAAAGAAACTTCTCACTCTAAGTGAGCAACAACTTGTAGACTGTGATCACATGgtaattataagcttaatttgtgtttggattcttcttccgagtctttcatctggactttggtcataatgaacctaaaagcttttggagggtttgttataatgaacatttctgatcatgcacaaatccaattaatacttgtttctgttatatttttctcaag

Basic information

species Vitis vinifera
transcript Vv13s0019g05120.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110393160|gb|EC958177.1|EC958177
EST:     AGAAACTTCTCACTCTAAGTGAGCAACAACTTGTAGACTGTGATCACATG                         TGCGATATAAGGGACAAGACCGCATGTGACAGTGGTTGCGAGGGAGGCCTT
genomic: AGAAACTTCTCACTCTAAGTGAGCAACAACTTGTAGACTGTGATCACATGgtaattataa ... ttttctcaagTGCGATATAAGGGACAAGACCGCATGTGACAGTGGTTGCGAGGGAGGCCTT
EST: gi|110401460|gb|EC968070.1|EC968070
EST:     AGAAACTTCTCACTCTAAGTGAGCAACAACTTGTAGACTGTGATCACATG                         TGCGATATAAGGGACAAGGCCGCATGTGACAGTGGTTGCGAGGGAGGCCTT
genomic: AGAAACTTCTCACTCTAAGTGAGCAACAACTTGTAGACTGTGATCACATGgtaattataa ... ttttctcaagTGCGATATAAGGGACAAGACCGCATGTGACAGTGGTTGCGAGGGAGGCCTT
EST: gi|110364611|gb|EC927994.1|EC927994
EST:     AGAAACTTCTCACTCTAAGTGAGCAACAACTTGTAGACTGTGATCACATG                         TGCGATTTAAGGGACAAGACCGCATGTGACAGTGGTTGCGAGGGAGGCCTT
genomic: AGAAACTTCTCACTCTAAGTGAGCAACAACTTGTAGACTGTGATCACATGgtaattataa ... ttttctcaagTGCGATATAAGGGACAAGACCGCATGTGACAGTGGTTGCGAGGGAGGCCTT
EST: gi|110397716|gb|EC963559.1|EC963559
EST:     AGAAACTTCTCACTCTAAGTGAGCAACAACTTGTAGACTGTGATCACATG                         TGCGATATAAGGGACAAGACCGCATGTGACAGTGGTTGCGAGGGAGGCCTT
genomic: AGAAACTTCTCACTCTAAGTGAGCAACAACTTGTAGACTGTGATCACATGgtaattataa ... ttttctcaagTGCGATATAAGGGACAAGACCGCATGTGACAGTGGTTGCGAGGGAGGCCTT