1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACGGTACCTGCTTGTCAAAATCTCTACAAAAATTCCTTCACTTATTACTGCCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAGgtgtgtctatcttatatggtattggaaactgatgatttgttaattcatatgccgcttttggtttgaacacttgggcacatatttctctctttcccccact...
species | Vitis vinifera |
transcript | Vv12s0059g01650.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAG AGCAATGTGAAAAGGACAAGGCTCGTGTTCTTGTACATTGCATGTCGGGAAEST: gi|161717570|gb|FC067881.1|FC067881
genomic: CCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAGgtgtgtctat ... gtttttgcagAGCAATGTGAAAAGGACAAGGCTCGTGTTCTTGTACATTGCATGTCGGGAA
EST: CCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAG AGCAATGTGAAAAGGACAAGGCTCGTGTTCTTGTACATTGCATGEST: gi|110384540|gb|EC948984.1|EC948984
genomic: CCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAGgtgtgtctat ... gtttttgcagAGCAATGTGAAAAGGACAAGGCTCGTGTTCTTGTACATTGCATG
EST: CCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAG AGCAATGTGAAAAGGACAAGGCTCGTGTTCTTGTACATTGCATGTCGGGAAEST: gi|110358966|gb|EC919676.1|EC919676
genomic: CCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAGgtgtgtctat ... gtttttgcagAGCAATGTGAAAAGGACAAGGCTCGTGTTCTTGTACATTGCATGTCGGGAA
EST: CCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAG AGCAATGTGAAAAGGACAAGGCTCGTGTTCTTGTACATTGCATGTCGGGAAEST: gi|110371829|gb|EC935953.1|EC935953
genomic: CCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAGgtgtgtctat ... gtttttgcagAGCAATGTGAAAAGGACAAGGCTCGTGTTCTTGTACATTGCATGTCGGGAA
EST: CCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAG AGCAATGTGAAAAGGACAAGGCTCGTGTTCTTGTACATTGCATGTCGGGAA
genomic: CCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAGgtgtgtctat ... gtttttgcagAGCAATGTGAAAAGGACAAGGCTCGTGTTCTTGTACATTGCATGTCGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGTACCTGCTTGTCAAAATCTCTACAAAAATTCCTTCACTTATTACTGCCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAGgtgtgtctatcttatatggtattggaaactgatgatttgttaattcatatgccgcttttggtttgaacacttgggcacatatttctctctttcccccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccac