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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCAGCAAAACTTCGTTGCATACCACCAATTTAGAATTGATGATCAAGGAGCACCAGCGATACATAAATGAACAGAAGAGTATAATGCAGTCTCTGAGgttaggttctgttgattttattatactattattattccttgctttttcgtttaattgatatgattccccaaagtttcttctgcactcatagcattccttt...

Basic information

species Vitis vinifera
transcript Vv11s0037g00730.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00730.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G07920.2 (Glycine max), 5'ss of exon 3
TTTCCAGCAAAACTTCGTTGCATACCACCAATTTAGAATTGATGATCAAGGAGCACCAGCGATACATAAATGAACAGAAGAGTATAATGCAGTCTCTGAGgttaggttctgttgattttattatactattattattccttgctttttcgtttaattgatatgattccccaaagtttcttctgcactcata--gcattccttt-
| |||||||    ||  ||||  | ||  |||||||||      || || || |||||| |||| ||||||||||| |||||||| ||||| ||||||||||||| |    || |||||     |||||| ||  |     |||| |  || |       |        || || | | |||   |  |   | | |||||| 
TGTCCAGCAGGGATTTCTTGCCCATCAAGAATTTAGAACAAGCAATTAAAGAACACCAGAGATATATAAATGAACAAAAGAGTATCATGCAATCTCTGAGgttagttctctttcattttca---actattttttatgtgctctttattattaacgaagagtctaatgttaatgtatatcctgattttgtgctggaatcctttt

upper sequence: Vv11s0037g00730.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G36800.2 (Glycine max), 5'ss of exon 1
TTTCCAGCAAAACTTCGTTGCATACCACCAATTTAGAATTGATGATCAAGGAGCACCAGCGATACATAAATGAACAGAAGAGTATAATGCAGTCTCTGAGgttaggttctgttgattttattatactatta-ttattccttgctttttcgtttaattgatatgattcc----ccaaagtttcttctgcactcatagcattccttt
| |||||||   |||  ||||  | ||  |||||||||    | || || || |||||| |||| ||||||||||| |||||||| ||||| ||||||||||||| ||||  |  || | ||  | | | |  ||||  |||  |  |   ||| |    | || ||       || |||| | |||   |  |     |     
TGTCCAGCAGGGCTTTCTTGCCCATCAAGAATTTAGAACAAGTAATTAAAGAACACCAGAGATATATAAATGAACAAAAGAGTATCATGCAATCTCTGAGgttag-ttct-ctacttctctttcattttcaactattttttgggtgctttattattgacgaagagtctaaggttaatgtttatcctgactttgtgctgctaa---