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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCTCCTCTTTATCTCTACTCAAAGGGTTGCCTTTTGCAGTGAGAGATCAATCAAATTCTCTTCTCCAAATGGTGAATTGGTTAGATTCCATTACAAGgtgggttagtcacttaactctttctctagatctctcacttcctgtttctccatctccatgttttctatcatcttagaggaaatcttgctttgtgcag

Basic information

species Vitis vinifera
transcript Vv10s0071g00360.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0071g00350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G43330.1 (Glycine max), 5'ss of exon 1
TGGCCTCCTCTTTATCTCTACTCAAAGGGTTGCCTTTTGCAGTGAGAGATCAATCAAATTCTCTTCTCCAAATGGTGAATTGGTTAGATTCCATTACAAGgtgggttagtcacttaactctttctctagatctctca----cttcctgtttctccatctccatgttttctatcatcttagaggaa-atcttgctttgtgcag
 || |||||||| ||||||||  | | ||||||||||||||||||||||||||| ||| | | | |||  || ||  |  || | ||  || |||| | |||  || | | |  ||| |  | |   | | ||||       |  | ||||||  |||      || |  |   ||| | ||| | |  | | | ||| |||
GGGTCTCCTCTTCATCTCTACAGACAAGGTTGCCTTTTGCAGTGAGAGATCAATGAAAGTTTTTACTCAGAAAGGCCACATGTTGAGGATCTATTATACGgtcagtca-tgaagtaatttatacataaaacctcttcatgtttctcagtttcttgatccaagatttgttgaagttctgataggtatacatggttgtgtacag

upper sequence: Vv10s0071g00350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G01400.1 (Glycine max), 5'ss of exon 3
TGGCCTCCTCTTTATCTCTACTCAAAGGGTTGCCTTTTGCAGTGAGAGATCAATCAAATTCTCTTCTCCAAATGGTGAATTGGTTAGATTCCATTACAAGgtgggttagtcacttaactctttctctagatctctcacttcctgtttctccatctccatgttttctatcatcttag--aggaaatcttgctttgtgcag-----------
 |||||||| || || || ||  | |  |||||||||||||||||||||||||||||   || |||| | || ||| | ||| | ||| |||||||||||||     |  ||| ||  |||  | | |          |  |   |  || || |  |   |   ||  |   ||   |  || ||||  ||  |  |            
AGGCCTCCTATTCATATCCACCGATAAAGTTGCCTTTTGCAGTGAGAGATCAATCAAGGCCTATTCTTCTAAGGGTCATTTGATCAGAATCCATTACAAGgta----atacacatatatctaacacaaa------tgttagccagtattctatatagacactacttaagaaactaagtaaaaagtcttttttattaaaaagcataaaatt

upper sequence: Vv10s0071g00350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G43350.1 (Glycine max), 5'ss of exon 3
---------------TGGCCTCCTCTTTATCTCTACTCAAAGGGTTGCCTTTTGCAGTGAGAGATCAATCAAATTCTCTTCTCCAAATGGTGAATTGGTTAGATTCCATTACAAGgtgggttagtcacttaactctttctctagatctctcacttcctgtttctccatctccatgttttctatcatcttagaggaaatcttgctttgtgcag
                || |||||||| || || ||  | ||||||||||||||||||||||||||||| ||| ||| | |||  || ||| |  |      |  |||      | |    |       ||| |  ||     || |                      || |  || |||||  | ||| |   ||  ||           
ATCCGGTCCTCTAGCAGGTCTCCTCTTCATATCCACAGACAGGGTTGCCTTTTGCAGTGAGAGATCAATGAAAGTCTTTACTCAGAAAGGTAATATATACgtaggccaaatttggataaactttctgaataagtacttacagggagcaaaatagaaaaagcaaaatgaatcaaaattctctat-gtgttaaaatcaacttt-----------

upper sequence: Vv10s0071g00350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G23520.1 (Glycine max), 5'ss of exon 2
TGGCCTCCTCTTTATCTCTACTCAAAGGGTTGCCTTTTGCAGTGAGAGATCAATCAAATTCTCTTCTCCAAATGGTGAATTGGTTAGATTCCATTACAAGgtgggttagtcacttaactctttctctagatctctcacttcctgtttctccatctccatgttttctatcatcttagaggaaatcttgctttgtgcag---------
 ||  ||||||| ||||| ||| | | ||||||||||||||||||||||||||| ||| ||| | |||  || ||| |  || | ||  | | ||| |||||     |||||   |    | | |  | |  |   | ||       || | ||  || ||  | |||  |     |   ||  | |    ||  |          
AGGTTTCCTCTTCATCTCCACTGACAAGGTTGCCTTTTGCAGTGAGAGATCAATGAAAGTCTTTACTCAGAAAGGTCATATGTTGAGGATTCGTTATAAGgt----cagtcatgaagtaatatatacaaaggttaaatttggataaacttc-tcggcaagtact-tatagttaggaaaagaaaataggaaggtaaaatgaatcgaa

upper sequence: Vv10s0071g00350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G23540.1 (Glycine max), 5'ss of exon 2
TGGCCTCCTCTTTATCTCTACTCAAAGGGTTGCCTTTTGCAGTGAGAGATCAATCAAATTCTCTTCTCCAAATGGTGAATTGGTTAGATTCCATTACAAGgtgggttagtcacttaactctttctctaga-tctctcacttcctgtttctccatctccatgttttctatcatcttagaggaaatcttgctt-tgtgcag----------------------
||| || ||||| || || ||| | |  ||||||||||||||||| ||||| |||||  ||||||| |||||||| ||    |||||| ||||||| ||||||  ||  |   |||| | ||| | || | | |||  | | |   | || |    | || |  |  ||| |  |  |   | | |||||  | || |                       
TGGTCTTCTCTTCATATCCACTGATAAAGTTGCCTTTTGCAGTGATAGATCCATCAAGATCTCTTCCCCAAATGGAGATGATGTTAGAGTCCATTATAAGgtgactttctt-tttaattttttttatatagtgtctatcatgcaagtgcttccgagctatctccttaatctttcttcat--acttttgctgatatgtacttcaatttctatgccatttcag

upper sequence: Vv10s0071g00350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G43290.1 (Glycine max), 5'ss of exon 2
TGGCCTCCTCTTTATCTCTACTCAAAGGGTTGCCTTTTGCAGTGAGAGATCAATCAAATTCTCTTCTCCAAATGGTGAATTGGTTAGATTCCATTACAAGgtgggttagtcacttaactctttctctag------atctct-cacttcctgtttctccatctcc---atgttttctatcatcttagaggaaatcttgctttgtgcag-------------
||| || ||||| || || || || |  ||||| ||||||||||| ||||| |||||  ||||||| |||||||| |||   |||||| ||||||| ||||||  ||  |   |||| | ||| | |||       ||| | ||  |  | | |  | ||||||   || |||  |   |  || |  || || || |||                    
TGGTCTTCTCTTCATATCCACCCATAAAGTTGCTTTTTGCAGTGATAGATCCATCAAGATCTCTTCCCCAAATGGAGAAGATGTTAGAGTCCATTATAAGgtgaatttctt-tttaattatttttatagtgtctagtctatgcaaatgttttctagcaatctccttaatctttcttcatacttttgctgatatgttacttcaatttctatgtcatttcag

upper sequence: Vv10s0071g00350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G23500.1 (Glycine max), 5'ss of exon 2
TGGCCTCCTCTTTATCTCTACTCAAAGGGTTGCCTTTTGCAGTGAGAGATCAATCAAATTCTCTTCTCCAAATGGTGAATTGGTTAGATTCCATTACAAGgtgggttagtcacttaactctttctctagatctctcacttcctgtttctccatctccatgttttctatcatcttagaggaaatcttgctttgtgcag----------
 ||  ||||||| ||||| ||| | | ||||||||| ||||||||||||||||| ||| ||| |  ||  || ||  |  || | ||  ||| ||| |||||     ||||||  |    |   |  | |   || ||||      ||   ||     |      ||  |   || |  |||||   |||    ||           
AGGTTTCCTCTTCATCTCCACTGACAAGGTTGCCTTCTGCAGTGAGAGATCAATGAAAATCTTTAGTCAGAAAGGCCATATGTTGAGGATCCGTTATAAGgt----cagtcacaaagtaatacatgcataggcctaacttaacaagtccttatt---gtagaagataagaaagtaaaataaatcaaacttctctcataagttaaaat

upper sequence: Vv10s0071g00350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G43300.1 (Glycine max), 5'ss of exon 2
TGGCCTCCTCTTTATCTCTACTCAAAGGGTTGCCTTTTGCAGTGAGAGATCAATCAAATTCTCTTCTCCAAATGGTGAATTGGTTAGATTCCATTACAAGgtgggttagtcacttaactctttctctagatctctcacttcctgtttctccatctccatgttttctatcatcttagaggaaatcttgctttgtgcag----------
 ||  ||||||| ||||| ||| | | ||||||||| ||||||||||||||||| ||| ||| | |||  || ||| |  || | ||  | | |||||||||     |||||   |    | | |  | |  |   | ||   |  |   | |||| |    | ||   |  |  |   |||  |      ||  |           
AGGTTTCCTCTTCATCTCCACTGACAAGGTTGCCTTCTGCAGTGAGAGATCAATGAAAGTCTTTACTCGGAAAGGTCATATGTTGAGGATTCGTTACAAGgt----cagtcatgaagtaatatatacaaaggttaaattt---ggataaacttctcaacaagtacttgtagttagggaaaaaaataagaaggtaaaatgaatcgaac

upper sequence: Vv10s0071g00350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G43320.1 (Glycine max), 5'ss of exon 2
TGGCCTCCTCTTTATCTCTACTCAAAGGGTTGCCTTTTGCAGTGAGAGATCAATCAAATTCTCTTCTCCAAATGGTGAATTGGTTAGATTCCATTACAAGgtgggttagtcacttaactct---ttctctagatct---ctcacttcctgtttctccatctccatgttttctatcatcttagaggaaatcttgctttgtgcag-------------------------------------------------------
 ||  ||||||| ||||| ||| | | ||||||||| ||||||||||||||||| ||| ||| | |||  || ||  |  || | ||  ||| ||| |||||  || |   | | |  | |   |   | | || |   |  ||||      ||   ||             |  |   || |  |||||   |||    ||                                                        
AGGTTTCCTCTTCATCTCCACTGACAAGGTTGCCTTCTGCAGTGAGAGATCAATGAAAGTCTTTACTCGGAAAGGCCATATGTTGAGGATCCGTTATAAGgtcagtcacaaagtaacatataaataggccaaatttgaacaaacttaacaagtccttattggagaagaagaaaagaaagtaaaataaatcaaacttctctcacaagtttcttgatccaagttttgttgaagttctaaagtatattcggtcatgtgcag

upper sequence: Vv10s0071g00350.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G23510.1 (Glycine max), 5'ss of exon 2
TGGCCTCCTCTTTATCTCTACTCAAAGGGTTGCCTTTTGCAGTGAGAGATCAATCAAATTCTCTTCTCCAAATGGTGAATTGGTTAGATTCCATTACAAGgtgggttagtcacttaactctttctctagatctctcacttcctgtttctccatctcca--tgttttctatcatcttagaggaaatcttgctttgtgcag--
 ||  ||||||| ||||| ||| | | ||||||||| ||||||||||||||||| ||| ||| | |||  || ||  |  || | ||  ||| ||| |||||  || | | |  |||    | |  || |||   |   ||  |    |  |  || |  |||   ||   |  ||    | |||  |  ||| |      
AGGTTTCCTCTTCATCTCCACTGACAAGGTTGCCTTCTGCAGTGAGAGATCAATGAAAGTCTTTACTCGGAAAGGCCATATGTTGAGGATCCGTTATAAGgtcagtca-ttaagtaatatatacaataaatcaaacttctctcgcacattaaattcaacttgtgcacttcaactttttttggaattctcttttctaacttc