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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtgggatacgataatgatctgtggatttgtggttattgtttaattggtaataaggttcgggttttgagttagggatttggtttgatctgaaatag

Basic information

species Vitis vinifera
transcript Vv10s0003g03150.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G03380.1 (Glycine max), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtgggatacg-ataatgatct-----gtggatttgtggttattgt-ttaatt-ggtaataaggttcggg-ttttgagttagggatttggtttgatctgaaatag--------------------------------------------
| ||||| || ||||| ||  | ||  ||||||||||||| ||||||||||||||||| ||||||||||| || ||||| || |||||||| ||||||||||||||    |    ||    || |     || | ||  | ||  | ||  |||||   ||||||  | |    ||||   ||   ||    ||| |   | ||  |                                             
TGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttattgttcatctctatttcaaatgttgtttattcgtattcgtactaattcaataataaaatgcaatcttttctatttctgaaaacgttggccattaatcactttatagttattattattgacaatgtcaatgttaattgttacag

upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G45430.1 (Glycine max), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtgggatacga--taatgatctgtggatttgtggttattgttta-attggtaataaggttcgggttttgagttagggatttggtttgatctgaa-atag---------------------------------------------------
| ||||| || ||||| ||  | ||  ||||||||||||| ||||||||||||||||| |||||||| || || ||||| || |||||||| |||||||||||||     | |    |  |  ||| |       || || || ||   ||| ||| | |        | ||   ||   |||||| | |  |||| | | |                                                    
TGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCAACTAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgctttcttcttcttcttcttcttttttcaaatgttttttattcgtattcgtactgattcaataatattttttttatgatttgttctattctggagacaagacggttgttcactttattgttattattattgataattttaatttttacag

upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G10220.1 (Glycine max), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgta-tgtgggatacgataatgatc-tgtggatttgtggttattgtttaattggtaataaggttcgggttttgagttagggatttggtttgatctgaaatag-----------------------------------------------------------------------
| || ||||| ||||| ||  ||||  | ||| |||| || ||||||||||| ||||||||||||||||| || |||||||||||||| || ||||||||||| |||    | |  |  |  |  | |   ||| | |  ||  || | ||  |  |  |   || || |||  ||     |||      ||| ||   |                                                                        
TGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAGCACCCCAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCCAAGTTCTGgtaatgttttgttcctttttattagttttatttttttgagatccttgatttaatgttttgcgccgtgtattgttttcttagtttccagcaatcagattgaattgcctctgttttgaattctagggtttaggggctgtttttataattttgaatttgttttgctttcaattag

upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G13270.1 (Glycine max), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtgggatacgataatgatctgtggatttgtggttattgt-ttaattggtaataaggttcgggttttgag--ttagggatttggtttgatctgaaatag-
 ||| || || ||||| ||  | || || |||| |||||| ||||||||| | |||||||| |||||||| |||||||| || |||||||| ||||||||||||||   |     |||   |||||   | | || | |  |  ||   ||  ||| | | |    ||  |||  ||    |  |       | |  | | | 
-TGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGCATCCTAAGATCTACAGGATGAAGCTGTGGGCCACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGtatgtacaacct--taacattctgtttctgtttgatgacggggttgtgtgaaaatgatgctttttttaagagaattttcaacctaaagactttttcatttgt

upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S56_243V6.3 (Physcomitrella patens), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga-tacgataatgatctgtggatttgtggttattgtttaattggtaataaggttcgggttttgagttaggga---tttggtttga-tctgaaatag-
| || ||| | || || ||  | |  ||| |||||   ||||||   |||||||||||||| |||||||| || || || |||||||| |||||||||||||| ||     | | | ||  || |||| || |   |  ||| | |    |||||   || | ||  |||  ||  | ||      |  |||  ||      || 
TGGTAGGGCGGGCCCTGCCCACTGCCACCAATGAGACCCCGAAGGCTTACCGCATGAAGCTATGGGCCACTAACGAAGTGCGCGCCAAGTCGAAGTTCTGgtaagtcactcttcaaaaaatatttgtg-atcttcagaaattatat----ggtaacctggcttggtatttatgtctgagagagcaagaattgcctcctggccagt

upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S74_193V6.2 (Physcomitrella patens), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatg-tgggatacgataatgatctgtggatttgtggttattgtttaattggtaataaggttcgggttttgagttag-ggatttg-gtttgatctgaaatag
| || ||| | || || ||  | | |||| |||||   || |||   ||||||||||||||||||||||| || || || |||||||| || ||||||||||||| ||   ||   |||         ||   |  | | | | ||  |        ||     | ||   | || | |||| || | || |  |||     
TGGTTGGGCGGGCCCTTCCTACCGCGACCAATGAGACACCTAAGGCTTACCGCATGAAGCTCTGGGCCACCAACGAAGTGCGCGCCAAGTCTAAGTTCTGgtatggtgttgtagtttaagttcgaaaagaaacgacgctctcgctttgtgtaattccagagaatgcttcgaaattggtggatctgtgctttagatgatga--

upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S184_111V6.1 (Physcomitrella patens), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtgggatacgataatgatctgtggatttgt-ggttattgtttaattggtaataaggttcgggttttgagttagggatttggtttgatctgaaatag--------
| |||||  | || |||||  | |  ||| |||||   || |||   |||||||||||| | ||||| || ||||| || |||||||| |||||||||||||| ||     || |   | ||  |    |  |  ||| |||   | || |||  ||   ||     |||  ||| | || ||   |   ||  |||| |        
TGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgtttt-cacaagtctcataagaaagtcagaaggtgattagatgatcggtgcta---ttt---cttttcgtt-gagacttacctcactcataaattgtattcaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30127989|gb|CB913328.1|CB913328
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|77577178|gb|DV217287.1|DV217287
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71871567|gb|DT020622.1|DT020622
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|161709735|gb|FC058453.1|FC058453
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110405774|gb|EC971324.1|EC971324
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|77583908|gb|DV220990.1|DV220990
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|77586588|gb|DV222419.1|DV222419
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|27583617|gb|CB006312.1|CB006312
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|161718472|gb|FC064804.1|FC064804
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110376595|gb|EC941655.1|EC941655
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|30325289|gb|CD008551.1|CD008551
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71866233|gb|DT015288.1|DT015288
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|77583161|gb|DV220615.1|DV220615
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71872578|gb|DT021633.1|DT021633
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71870661|gb|DT019716.1|DT019716
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110387390|gb|EC952051.1|EC952051
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110406102|gb|EC971661.1|EC971661
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|27578831|gb|CB001526.1|CB001526
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110374615|gb|EC939502.1|EC939502
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|27583292|gb|CB005987.1|CB005987
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|87584790|gb|DY473816.1|DY473816
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|18459373|gb|BM437651.1|BM437651
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|30325604|gb|CD008866.1|CD008866
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|87584933|gb|DY473902.1|DY473902
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110410770|gb|EC976462.1|EC976462
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|77585012|gb|DV221590.1|DV221590
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71870822|gb|DT019877.1|DT019877
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71875989|gb|DT025044.1|DT025044
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|77584511|gb|DV221320.1|DV221320
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|27580506|gb|CB003201.1|CB003201
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|30133386|gb|CB918725.1|CB918725
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|351026970|gb|FQ436623.1|FQ436623
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110409711|gb|EC975381.1|EC975381
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|77577870|gb|DV217685.1|DV217685
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|77584342|gb|DV221243.1|DV221243
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71871530|gb|DT020585.1|DT020585
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110689267|gb|EE065344.1|EE065344
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|27580390|gb|CB003085.1|CB003085
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110358381|gb|EC922551.1|EC922551
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|51050597|gb|CO818632.1|CO818632
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71875022|gb|DT024077.1|DT024077
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110695933|gb|EE074518.1|EE074518
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110684627|gb|EE062118.1|EE062118
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGTGGGGAGAGCTCTCCCGTCGGAGACCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTGgtatgtgggatacgataatgatctgtggatttgtggttattgtttaattggtaataaggttcgggttttgagttagggatttggtttgatctgaaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC