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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactactttgaatgcccacaagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcag

Basic information

species Vitis vinifera
transcript Vv10s0003g01480.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G09090.1 (Glycine max), 5'ss of exon 2
GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactactttgaatgcc----cacaagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcag-------------------
|| || ||| || ||||     ||||  ||||| |  |||| ||||||||||| || || || |||||||| ||||||||||| ||||||||||||| |    | | ||| ||      | |  |||    ||    |||| |  |  |   | | |       |  | | | || | || ||  | | ||| ||                      
GAGATGTCTTCCTCTGTCACCAATGGCGATGATTCCCTCACTGGTCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAGgtattatatttgtaaattccattctgccaataatactgctcttgaattatttgctgggttgttaaaaa-ggccatatgacatttatcctggcaagtttaatgtcttgtacaatcattcttgtag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G12370.1 (Glycine max), 5'ss of exon 2
GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactactttgaa-------tgcccacaagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcag
   || ||  |  | | || |||||| |||||| || | |  ||||||||||| || || ||| ||||||| ||||||||| |||||||||||||||   |   |  ||       | ||   || ||  |  |        || |    |  | |  | |||| ||   | | |  |   | ||   ||| |        
---ATATCCACTTCCGCTGATGATGGTAATGATTCTCTGAATGGTCACATCATATCTACTACAGTTGGAGGAAAAAATGGGAAGCCCAAACAGgtatttttttgtgaaacccatttttcctgtaaacagctattaagattttttttttcagatactgagtttgttaaaaatgtaacttggatttttaaatgtt--------

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 2
GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactactttgaat--------gcccacaa-gcaatttctcttccaaattgtgagtggaaatat---gattgtca-acggt-tttatat---atttcttgt-gatgcttactgcag------------
|| || ||| || ||||  |  ||||||||||| |  | || ||||||||||| || || || |||||||| ||||||||||| |||||||||||||      | | |||        ||| | ||    | |  | ||  ||||| |  |  |   | |    |||| |  | ||  |||||     |||    ||  ||| ||  | ||             
GAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAGgtattgtctttgtaaattccattatgccgataatattactcttattttaaattatctgctgggttgttaaaattgccttatggcatttatcctggattgtaagttaatgttttgtacaatgatttttgtag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G30060.2 (Glycine max), 5'ss of exon 2
GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactactttgaatgcccacaagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcag
|| || ||| || ||||     ||||  ||||| || |||| || |||||||| || || || |||||||| ||||||||||| ||||||||||||| | || | | | | |  |     ||||         | ||||  |   |  |||  | |    |   |||| || | |  |   ||  ||  || ||
GAGATGTCTTCCTCTGTCACCAATGGCGATGATTCTCTCACTGGCCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAGgtatta-tattattact-cttattttgaatt---------atttgtcgggtcatttatcctggattgcaagttta-atgtctggtacaatcattcttgtag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G30060.3 (Glycine max), 5'ss of exon 1
-------GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactactttgaatgcccacaagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcag
       || || ||| || ||||     ||||  ||||| || |||| || |||||||| || || || |||||||| ||||||||||| ||||||||||||| | || | | | | |  |     ||||         | ||||  |   |  |||  | |    |   |||| || | |  |   ||  ||  || ||
TTACCAGGAGATGTCTTCCTCTGTCACCAATGGCGATGATTCTCTCACTGGCCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAGgtatta-tattattact-cttattttgaatt---------atttgtcgggtcatttatcctggattgcaagttta-atgtctggtacaatcattcttgtag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G06760.1 (Glycine max), 5'ss of exon 2
GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactactttgaatgcccacaagca---atttctcttccaaattgtgagtggaaatatgattgtcaac--ggttttat-atatttcttgtg------atgcttactgcag-------------------
|| || ||| || ||||  |  ||||||||||| |  | || || |||||||| || || || |||||||| ||||||||||| ||||||||||||| |    | | ||| ||   | ||    | |  |  ||  | ||   | |       || |||| ||    |  |||| | |||| |  ||      | | ||| ||                      
GAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGACACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAGgtatcatctttgtaaattccattatgctgataatattactcttatttaaaattatttgcttggttgttaaaaaagccttatgacatttatcctggattgcaagtttaatgtgttgtacaatgatttttgtag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G18710.1 (Arabidopsis thaliana), 5'ss of exon 2
GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactactttgaatgcccacaagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcag
|| ||  ||||  |||| ||||||||  ||||||  ||||| ||||| || |||||||||||||| || || |||||||| || || ||||||||||      ||| || ||    || ||| |   ||  |   || |  ||  |   | |||| |  | ||||    |||  | ||   ||| |      ||
GAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAACCAAAACAGgtat------ttttaaggcttttaaccaaatagactcac---ttttatgtatatgcaagatt-ttgatggttaccaatacatttttctatgttgttgttag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 2
GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactactttgaatgcccac--aagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcag
|||||    ||  | || || ||||||||||   | |  || |||||||||||| | ||||| ||||| |||||||||||| | ||||| |||||      |    |  | ||     ||  |||  ||    ||| ||| |  ||  | |           |    ||  |     |     | |   ||  || 
GAAATTGAAGCGTCAGTAGTAGATGGGAATGGCACCGAGACGGGTCACATCATTGCTACCACTATTGGGGGGAAAAATGGGCAACCCAAGCAGgtgcggtgatggcgtcttcctgatgaaataatgactgaagcaacttg-gcatgacattgcttaccctctccaccttgcaggccgccca-aaggaacacatca-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712383|gb|EE089944.1|EE089944
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|30135526|gb|CB920864.1|CB920864
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110711352|gb|EE087735.1|EE087735
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71865182|gb|DT014237.1|DT014237
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|161713266|gb|FC063080.1|FC063080
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110713972|gb|EE090359.1|EE090359
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71863156|gb|DT012211.1|DT012211
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71881193|gb|DT030248.1|DT030248
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110713489|gb|EE089456.1|EE089456
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71860238|gb|DT009293.1|DT009293
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110729499|gb|EE105506.1|EE105506
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110712650|gb|EE087882.1|EE087882
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|352794803|gb|FQ475298.1|FQ475298
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|30129470|gb|CB914809.1|CB914809
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110711542|gb|EE088143.1|EE088143
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71881129|gb|DT030184.1|DT030184
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71855884|gb|DT004939.1|DT004939
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110687697|gb|EE065401.1|EE065401
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71888939|gb|DT037994.1|DT037994
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71861754|gb|DT010809.1|DT010809
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|294966698|gb|GW839689.1|GW839689
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110690114|gb|EE066940.1|EE066940
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110711670|gb|EE088415.1|EE088415
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71855247|gb|DT004302.1|DT004302
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71864023|gb|DT013078.1|DT013078
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110713041|gb|EE088616.1|EE088616
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71865215|gb|DT014270.1|DT014270
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110719262|gb|EE097039.1|EE097039
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110712783|gb|EE088141.1|EE088141
EST:     GTCACACCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110713002|gb|EE088542.1|EE088542
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110713463|gb|EE089416.1|EE089416
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110726198|gb|EE101771.1|EE101771
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110712273|gb|EE089706.1|EE089706
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110711844|gb|EE088789.1|EE088789
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110699277|gb|EE076136.1|EE076136
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71883493|gb|DT032548.1|DT032548
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|33405718|gb|CF211345.1|CF211345
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110391404|gb|EC956378.1|EC956378
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110713575|gb|EE089626.1|EE089626
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110699260|gb|EE076105.1|EE076105
EST:     CATTTCCACCACCATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: CATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAATCTCTGCCCCTGTTGTTGATGGGAATGATCCTGTCACAGGTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactactttgaatgcccacaagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG