1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTTGGGATTGGTGCTGACGGTGTGATCTTCGCCATGCCGGGGATCAATGGCACTGATTATACAATGAGGATTTTCAATTCTGATGGCAGTGAGCCTGAGgtaattaacaatttccacgtacatgttttctgttgagtggatcgtcagtctgtttgttgagtagccctgaaaatttgagctaaaaatgtggaaagtaatt...
species | Vitis vinifera |
transcript | Vv08s0040g02540.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACTGATTACACAATGAGGATTTTTCAATTCTGATGGCAGTGAGCCTGAG ATGTGTGGTAATGGAGTACGATGCTTTGCCAGATTCATTGCAGAGCTTGAAEST: gi|30131639|gb|CB916978.1|CB916978
genomic: CACTGATTATACAATGAGGA-TTTTCAATTCTGATGGCAGTGAGCCTGAGgtaattaaca ... ctatgtgtagATGTGTGGTAATGGAGTACGATGCTTTGCCAGATTCATTGCAGAGCTTGAA
EST: GCACTGATTACACAATGAGGATTTTCAATTCTGATGGCAGTGAGCCTGAG ATGTGTGGTAATGGAGTACGATGCTTTGCCAGATTCATTGCAGAGCTTGAAEST: gi|110382285|gb|EC939068.1|EC939068
genomic: GCACTGATTATACAATGAGGATTTTCAATTCTGATGGCAGTGAGCCTGAGgtaattaaca ... ctatgtgtagATGTGTGGTAATGGAGTACGATGCTTTGCCAGATTCATTGCAGAGCTTGAA
EST: GCACTGATTACACAATGAGGATTTTCAATTCTGATGGCAGTGAGCCTGAG ATGTGTGGTAATGGAGTACGATGCTTTGCCAGATTCATTGCAGAGCTTGAAEST: gi|110423955|gb|EC990308.1|EC990308
genomic: GCACTGATTATACAATGAGGATTTTCAATTCTGATGGCAGTGAGCCTGAGgtaattaaca ... ctatgtgtagATGTGTGGTAATGGAGTACGATGCTTTGCCAGATTCATTGCAGAGCTTGAA
EST: GCACTGATTATACAATGAGGATTTTCAATTCTGATGGCAGTGAGCCTGAG ATGTGTGGTAATGGAGTACGATGCTTTGCCAGATTCATTGCAGAGCTTGAA
genomic: GCACTGATTATACAATGAGGATTTTCAATTCTGATGGCAGTGAGCCTGAGgtaattaaca ... ctatgtgtagATGTGTGGTAATGGAGTACGATGCTTTGCCAGATTCATTGCAGAGCTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGGGATTGGTGCTGACGGTGTGATCTTCGCCATGCCGGGGATCAATGGCACTGATTATACAATGAGGATTTTCAATTCTGATGGCAGTGAGCCTGAGgtaattaacaatttccacgtacatgttttctgttgagtggatcgtcagtctgtttgttgagtagccctgaaaatttgagctaaaaatgtggaaagtaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagtaa