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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAGgtatctttttttccccctttgattcggtttgtttgcatgtaaagttttcgaggaaaaattttcttttaaaaagaaactgtaaataaattcaccttaaaaa...

Basic information

species Vitis vinifera
transcript Vv07s0129g00420.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110386724|gb|EC951341.1|EC951341
EST:     GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAG                         TGTAAGGTGTGCATGCAGACATTCATCTGCACGACATCTGAGGCAAAGTGC
genomic: GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAGgtatcttttt ... ttgattgcagTGTAAGGTGTGTATGCAGACATTCATCTGCACGACATCTGAGGCAAAGTGC
EST: gi|110416862|gb|EC982870.1|EC982870
EST:     GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAG                         TGTAAGGTGTGCATGCAGACATTCATCTGCACGACATCTGAGGCAAAGTGC
genomic: GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAGgtatcttttt ... ttgattgcagTGTAAGGTGTGTATGCAGACATTCATCTGCACGACATCTGAGGCAAAGTGC
EST: gi|110403184|gb|EC964475.1|EC964475
EST:     GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAG                         TGTAAGGTGTGCATGCAGACATTCATCTGCACGACATCTGAGGCAAAGTGC
genomic: GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAGgtatcttttt ... ttgattgcagTGTAAGGTGTGTATGCAGACATTCATCTGCACGACATCTGAGGCAAAGTGC
EST: gi|110707891|gb|EE084804.1|EE084804
EST:     GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAG                         TGTAAGGTGTGCATGCAGACATTCATCTGCACGACATCTGAGGCAAAGTGC
genomic: GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAGgtatcttttt ... ttgattgcagTGTAAGGTGTGTATGCAGACATTCATCTGCACGACATCTGAGGCAAAGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAGgtatctttttttccccctttgattcggtttgtttgcatgtaaagttttcgaggaaaaattttcttttaaaaagaaactgtaaataaattcaccttaaaaa

- - - - - - - - - - AAGAAA
- - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa