Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTGTGTGGGGAGACCCTGCAGAAGTTGGGAAGGTTGTGGCGGGGGCGGCATTTGATGTTGTTCTGGATAACAATGGCAAGGACATTGACACTGTGAGgtttgtttgctttaattcttgaaacctattcttcaattgtctagattttggtatttgccatatagaatgtaaatctgagagaagggaaagggtttggttc...

Basic information

species Vitis vinifera
transcript Vv07s0104g00510.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110692603|gb|EE072033.1|EE072033
EST:     GCATTTGATGTTGTTCTGGATAACAATGGCAAGGACATTGCCACTGTGAG                         GCCTGTAGTAGACTGGGCCAAGAGTTCTGGGGTCGAGCAATTTCTGTTCAT
genomic: GCATTTGATGTTGTTCTGGATAACAATGGCAAGGACATTGACACTGTGAGgtttgtttgc ... tcatacatagGCCTGTAGTAGACTGGGCCAAGAGTTCTGGGGTCGAGCAATTTCTGTTCAT
EST: gi|32268606|gb|CD717765.1|CD717765
EST:     GCATTTGATGTTGTTCTGGATAACAATGGCAAGGACATTGACACTGTGAG                         GCCTGTAGTAGACTGGGCCAAGAGTTCTGGGGTCGAGCAATTTCTGTTCAT
genomic: GCATTTGATGTTGTTCTGGATAACAATGGCAAGGACATTGACACTGTGAGgtttgtttgc ... tcatacatagGCCTGTAGTAGACTGGGCCAAGAGTTCTGGGGTCGAGCAATTTCTGTTCAT
EST: gi|29784366|gb|CB344975.2|CB344975
EST:     GCATTTGATGTTGTTCTGGATAACAATGGCAAGGACATTGACACTGTGAG                         GCCTGTAGTAGACTGGGCCAAGAGTTCTGGGGTCGAGCAATTTCTGTTCAT
genomic: GCATTTGATGTTGTTCTGGATAACAATGGCAAGGACATTGACACTGTGAGgtttgtttgc ... tcatacatagGCCTGTAGTAGACTGGGCCAAGAGTTCTGGGGTCGAGCAATTTCTGTTCAT
EST: gi|110378007|gb|EC943115.1|EC943115
EST:     ATAACAATGGCAAGGACATTGACACTGTGAG                         GCTTGTAGTAGACTGGGCCAAGAGTTCTGGGGTCGAGCAATTTCTGTTCAT
genomic: ATAACAATGGCAAGGACATTGACACTGTGAGgtttgtttgc ... tcatacatagGCCTGTAGTAGACTGGGCCAAGAGTTCTGGGGTCGAGCAATTTCTGTTCAT
EST: gi|34548822|gb|CF517054.1|CF517054
EST:     GCATTTGATGTTGTTCTGGATAACAATGGCAAGGACATTGACACTGTGAG                         GCCTGTAGTAGACTGGGCCAAGAGTTCTGGGGTCGAGCAATTTCTGTTCAT
genomic: GCATTTGATGTTGTTCTGGATAACAATGGCAAGGACATTGACACTGTGAGgtttgtttgc ... tcatacatagGCCTGTAGTAGACTGGGCCAAGAGTTCTGGGGTCGAGCAATTTCTGTTCAT
EST: gi|110703350|gb|EE080117.1|EE080117
EST:     GCATTTGATGTTGTTCTGGATAACAATGGCAAGGACATTGACACTGTGAG                         GCCTGTAGTAGACTGGGCCAAGAGTTCTGGGGTCGAGCAATTTCTGTTCAT
genomic: GCATTTGATGTTGTTCTGGATAACAATGGCAAGGACATTGACACTGTGAGgtttgtttgc ... tcatacatagGCCTGTAGTAGACTGGGCCAAGAGTTCTGGGGTCGAGCAATTTCTGTTCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGACTGTGTGGGGAGACCCTGCAGAAGTTGGGAAGGTTGTGGCGGGGGCGGCATTTGATGTTGTTCTGGATAACAATGGCAAGGACATTGACACTGTGAGgtttgtttgctttaattcttgaaacctattcttcaattgtctagattttggtatttgccatatagaatgtaaatctgagagaagggaaagggtttggttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agggaaa