Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCTTCTACCGCCGAGAAGTACCAGCTAGGATTTCTTCTCTCCGCCTTTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattttctagctatattgggcatttaggtgactagtttgacttatatgtttctgaattttgttgttttccaccattttcccataaagtgttcatt...

Basic information

species Vitis vinifera
transcript Vv07s0005g01250.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g01250.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G62580.1 (Arabidopsis thaliana), 5'ss of exon 2
GTCTTCTTCTACCGCCGAGAAGTACCAGCTAGGATTTCTTCTCTCCGCCTTTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgta--tcgattttctagctatattgggcatttaggtgactagtttgacttatatgtttctgaattttgttgttttccaccattttcccataaagtgttcatt
||| |||||||| | |||||| || ||| |||| ||||| || ||||| ||||||||||||||||| |||||| | ||||| || || ||||| || || |||  | | | |||       ||||   |   |  ||  ||         | ||  |  ||||    ||   |  ||     |||    ||    |      
GTCATCTTCTACGGTCGAGAAATATCAGATAGGGTTTCTCCTATCCGCTTTTGCTTTCAATCTCACCAATTTGTTTGTCTTCACTCCCATGACCATCGATgtaagtggctattcccctccaattgcatagaaaaatgcata-------caagatcctaatgaacca-gtcaatggcctttgctttggtgtatgtag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110404850|gb|EC970374.1|EC970374
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|32244877|gb|CD710696.1|CD710696
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110363827|gb|EC927447.1|EC927447
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110406518|gb|EC972094.1|EC972094
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|32245090|gb|CD710909.1|CD710909
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|161716288|gb|FC066859.1|FC066859
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|349823930|gb|FQ415341.1|FQ415341
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|349824074|gb|FQ417461.1|FQ417461
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|351041831|gb|FQ456041.1|FQ456041
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110716205|gb|EE090985.1|EE090985
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110391769|gb|EC956769.1|EC956769
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|18457988|gb|BM436266.1|BM436266
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110388107|gb|EC952825.1|EC952825
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110395090|gb|EC960638.1|EC960638
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|32458962|gb|CD800136.1|CD800136
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110410010|gb|EC975685.1|EC975685
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|32457596|gb|CD798770.1|CD798770
EST:     GCTTTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGGGAGAGCAAAACATTGGTGAGGAA
genomic: GC--TTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110696040|gb|EE074745.1|EE074745
EST:     ATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: ATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110721353|gb|EE098255.1|EE098255
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|22007459|gb|BQ792493.1|BQ792493
EST:     TTGCTTTCAATCTCACAAATTTGTTGGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|27580259|gb|CB002954.1|CB002954
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|26266224|gb|CA817287.1|CA817287
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|32458160|gb|CD799334.1|CD799334
EST:     GCTTTCAATCTCACAAATTTGCTCGTCTTTACACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACGTTGGTGAGGAA
genomic: GCTTTCAATCTCACAAATTTGCTCGTCTTT--ACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110407104|gb|EC972699.1|EC972699
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110403851|gb|EC969656.1|EC969656
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|26262184|gb|CA813247.1|CA813247
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATGGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110688818|gb|EE067802.1|EE067802
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|32459478|gb|CD800652.1|CD800652
EST:     GCTTTCAATCTCACAAATTTGCTCGTCTTTATACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: GCTTTCAATCTCACAAATTTGCTCGTC-TT-TACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|27584297|gb|CB006992.1|CB006992
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|349823929|gb|FQ415340.1|FQ415340
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110407882|gb|EC973500.1|EC973500
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|349812917|gb|FQ410559.1|FQ410559
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|349824982|gb|FQ406554.1|FQ406554
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|51052081|gb|CO819380.1|CO819380
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|32457581|gb|CD798755.1|CD798755
EST:     GCTCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: G--CTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110724199|gb|EE099820.1|EE099820
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|351024432|gb|FQ426241.1|FQ426241
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|349830579|gb|FQ416877.1|FQ416877
EST:     TTGCTTTCGATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|351048872|gb|FQ431537.1|FQ431537
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|30306151|gb|CB982945.1|CB982945
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|349814247|gb|FQ398711.1|FQ398711
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAAGTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAAAGAGAGCAGAACATTGGTTGAAGA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGT-GAGGA
EST: gi|351034080|gb|FQ447998.1|FQ447998
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|32457155|gb|CD798329.1|CD798329
EST:     TTTACACCAATGACAATTGAG                         A
genomic: TTTACACCAATGACAATTGAGgtatcgattt ... ttttggacag-
EST: gi|32457155|gb|CD798329.1|CD798329
EST:     TTTACACCAATGACAATTGAG                         A
genomic: TTTACACCAATGACAATTGAGgtatcgattt ... ttttggacag-
EST: gi|32457155|gb|CD798329.1|CD798329
EST:     TTTACACCAATGACAATTGAG                         A
genomic: TTTACACCAATGACAATTGAGgtatcgattt ... ttttggacag-
EST: gi|349829115|gb|FQ419647.1|FQ419647
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110407690|gb|EC973301.1|EC973301
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|46911027|gb|CN546402.1|CN546402
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110723673|gb|EE101255.1|EE101255
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110721177|gb|EE097879.1|EE097879
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110408179|gb|EC973805.1|EC973805
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|22011788|gb|BQ796822.1|BQ796822
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|32457603|gb|CD798777.1|CD798777
EST:     GCTTTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGGGAGAGCAAAACATTGGTGAGGAA
genomic: GC--TTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|22011654|gb|BQ796688.1|BQ796688
EST:     TTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|110405129|gb|EC970664.1|EC970664
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
EST: gi|22012126|gb|BQ797160.1|BQ797160
EST:     TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAG                         ATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA
genomic: TTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattt ... ttttggacagATGATGAAGCAGAGGCACAAGGTGGAGAGAGAGCAAAACATTGGTGAGGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTTCTTCTACCGCCGAGAAGTACCAGCTAGGATTTCTTCTCTCCGCCTTTGCTTTCAATCTCACAAATTTGCTCGTCTTTACACCAATGACAATTGAGgtatcgattttctagctatattgggcatttaggtgactagtttgacttatatgtttctgaattttgttgttttccaccattttcccataaagtgttcatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttccacc