Sequence
atgc intronic sequence ATGC exonic sequenceAAGGAGACATCAGCTATCTGCAGAAGTTCTTTCTGATGTATGTGGGTGGGAGAGTGCCTCTCCATCTCCAGGAAGATTTTTGCGGCACCGCTCTTCTTAGgtacataataaactatttattttttctgggtaccaaatgttattcgctggatatacattgtcggtcctttatgaaacagtttaagcttttaggttaaaca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0080g00230.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G19100.1 (Glycine max), 5'ss of exon 2
AAGGAGACATCAGCTATCTGCAGAAGTTCTTTCTGATGTATGTGGGTGGGAGAGTGCCTCTCCATCTCCAGGAAGATTTTTGCGGCACCGCTCTTCTTAGgtacataataaactatttattttttctgggtaccaaatgttattcgctggatatacattgtcggtcctttatgaaacagtttaagcttttaggttaaaca
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AAGGAGACATAAGTTATATGCAAAAGTTCTTTCTCATGTACGTGGGTGGAAGGATGCCCCTCCATCTTCAAGAAGATTTCTGTGGCACGGCGCTTCTTAGgtatatcctgctcctgccttttgtatttttttttccttcttcttttagtcatgcctcttttaatttattaatactctcttttggacatgctaaattgtcg
upper sequence: Vv06s0080g00230.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G09340.1 (Glycine max), 5'ss of exon 2
AAGGAGACATCAGCTATCTGCAGAAGTTCTTTCTGATGTATGTGGGTGGGAGAGTGCCTCTCCATCTCCAGGAAGATTTTTGCGGCACCGCTCTTCTTAGgtacataata--aactatttattttttctgggtaccaaatgttattcgctggatatacattgtcggtcctttatgaaacagtttaagcttttaggttaaaca-
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AAGGAGATATAAGTTATTTGCAAAAGTTCTTTCTCATGTACGTGGGTGGAAGGATGCCCCTCCATCTTCAAGAAGATTTCTGTGGCACGGCGCTTCTTAGgtatatcctgccatttgtattttctttctttcttttagctatgcctcttttagttta--ttagtactctcttttgga-catactaaattgttatctctttttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871206|gb|DT020261.1|DT020261EST: AGAGTGCCTCTCCATCTCCAGGAAGATTTTTGCGGCACCGCTCTTCTTAG TACAGAATGGCTCCGGAGTGACCCACGACGAACAGCTGTAGGATTGGATTT
genomic: AGAGTGCCTCTCCATCTCCAGGAAGATTTTTGCGGCACCGCTCTTCTTAGgtacataata ... tgtttgacagTACAGAATGGCTCCGGAGTGACCCACGGCGAACAGCTGTAGGATTGGATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGGAGACATCAGCTATCTGCAGAAGTTCTTTCTGATGTATGTGGGTGGGAGAGTGCCTCTCCATCTCCAGGAAGATTTTTGCGGCACCGCTCTTCTTAGgtacataataaactatttattttttctgggtaccaaatgttattcgctggatatacattgtcggtcctttatgaaacagtttaagcttttaggttaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacag