1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGAATATTTTGAAACCCAAACCAAACCCACAGCAACAACTCAGAGATTGGCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagtttttttacctatttcctttttttttttttatagtataattattattattattttttgtaattggaatttagattaatgggtttgtttgtaattg...
species | Vitis vinifera |
transcript | Vv06s0061g00540.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAACGGAAACTCCGGCAAGAGTGTCGCAACATCGAACGCCAAATTCGAG ATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCAEST: gi|110718482|gb|EE095363.1|EE095363
genomic: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagttttt ... ttttccacagATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCA
EST: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAG ATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCAEST: gi|110718154|gb|EE094659.1|EE094659
genomic: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagttttt ... ttttccacagATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCA
EST: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAG ATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCAEST: gi|26257618|gb|CA808681.1|CA808681
genomic: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagttttt ... ttttccacagATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCA
EST: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAG ATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCAEST: gi|351031409|gb|FQ445434.1|FQ445434
genomic: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagttttt ... ttttccacagATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCA
EST: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAG ATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCAEST: gi|110702630|gb|EE078767.1|EE078767
genomic: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagttttt ... ttttccacagATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCA
EST: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAG ATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCAEST: gi|110722756|gb|EE099290.1|EE099290
genomic: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagttttt ... ttttccacagATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCA
EST: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAG ATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCAEST: gi|110362725|gb|EC926275.1|EC926275
genomic: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagttttt ... ttttccacagATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCA
EST: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAG ATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCAEST: gi|351014990|gb|FQ444279.1|FQ444279
genomic: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagttttt ... ttttccacagATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCA
EST: GCAACGGAAACTCCGTCAAGAGTGTCGCAGCATCGAACGCCAAATTCGAG ATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCAEST: gi|110396776|gb|EC962475.1|EC962475
genomic: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagttttt ... ttttccacagATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCA
EST: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAG ATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCAEST: gi|26257678|gb|CA808741.1|CA808741
genomic: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagttttt ... ttttccacagATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCA
EST: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAG ATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCA
genomic: GCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagttttt ... ttttccacagATATACAGAGAGAAGAGAAAGGTGTGCAGAAAGCAATTAGGGAAGCAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAATATTTTGAAACCCAAACCAAACCCACAGCAACAACTCAGAGATTGGCAACGGAAACTCCGTCAAGAGTGTCGCAACATCGAACGCCAAATTCGAGgctagtttttttacctatttcctttttttttttttatagtataattattattattattttttgtaattggaatttagattaatgggtttgtttgtaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattggaa