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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGGTGCTTCAAACCGACAACTCTGTGTTGTATGACCGCCTGAGTACAAGgtagtgatgtttttgctcagggcatcatcttcttggtttcttcatacccttccacccatcattttggctcaaaaaattgtttgttgtgtggcag

Basic information

species Vitis vinifera
transcript Vv06s0004g03280.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G08350.1 (Glycine max), 5'ss of exon 3
TGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGGTGCTTCAAACCGACAACTCTGTGTTGTATGACCGCCTGAGTACAAGgtagtgatgtttttgctcagggcatcatcttcttggtttcttcatacccttccacccatcattttggctcaaaaaattgtttgt-tgtgtggcag
||||||||||||| ||||||||||| || ||||| ||||||||| | ||||| || |||||||| || ||| | || |||||||||||  |||||   |||||  || |  |  | |   |  ||    || ||| |||    |  |  ||      ||   |||   |  |||  ||   ||| | |||| |||
TGGACTACCATGGCTGTGATTTCTTTCCCGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCGTTTTGTATGACCGTTTGAGTCGGAGgtacagaagactc-gtttctgttattga-ttattgattttgctactctatt------attgatttcattataaactttccctgtatatgtgacag

upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G27430.1 (Glycine max), 5'ss of exon 3
TGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGGTGCTTCAAACCGACAACTCTGTGTTGTATGACCGCCTGAGTACAAGgtagtgatgtttttgctcagggcatcatcttcttggtttcttcatacccttccacccatcattttggctcaaaaaattgtttgt-tgtgtggcag
||||||||||||| ||||||||||| |||||||| ||||||||| | ||||| || |||||||| || ||| |  | |||||||||||  ||||||  |||||  || |  |  | ||  |  ||  | |  || ||||  | |||| ||   |    |   |||   |  |||  ||    || | |||| |||
TGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGgtacggaagactc-gttcctgttattgt-tcattagttt--tgatactctatta----ttggtttcattataaattttccccgtatatgtgacag

upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G33100.1 (Glycine max), 5'ss of exon 3
TGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGGTGCTTCAAACCGACAACTCTGTGTTGTATGACCGCCTGAGTACAAGgtagtgatgtttttgctcagggcatcatct--tcttggtttcttcatacccttccacccatcattttggctcaaaaaattgtttgt---tgtgtggcag
||||||||||||| || | |||||| ||||||||||||||| || ||||||| || |||||||| || ||| |  | |||||||| ||  ||||||  |||||  || |   ||| | |     | || |    |||||||    |||| ||   |    |    ||  |  |    | | |       | |||| |||
TGGACTACCATGGCTGCGTTTTCTTTCCTGAGCGATGGTTTAATTGTGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGATCGTTTGAGTAGGAGgtatggaagcacttg-taattctgttatttaacgttggttttgctatactctattagtggtttcattatcatagcttactttccccgtatatgtgacag

upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G60340.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGGTGCTTCAAACCGACAACTCTGTGTTGTATGACCGCCTGAGTACAAGgtagtgatgtttttgctcagggcatcatcttcttggtttcttcatacccttccacccatcattttg-gctcaaaaaattgtttgttgtgtggcag
||||||||||||| ||||| ||||| ||| |||||||||||||||| || || ||||||| |||||| ||||| || |||||||||||  | |  |  ||||   ||| |       ||    ||  |  | || |||| ||    |  |  ||    ||   ||| | ||    ||         |        
TGGACTACCATGGCTGTGACTTCTTTCCTCAGCGATGGTTTGATCGCGTTGTCGTGCTTCGAACCGAGAACTCCGTTTTGTATGACCGTTTAACGAATAGgtca-gatttccaaatccatcaaat-gtagttttagtttgttttcgctttagcaaggttctgattgtgttctctcaaccaaccaaagcag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77577867|gb|DV217683.1|DV217683
EST:     GTGGTGCTTCAAACCGACAACTCTGTGTTGTATGACCGCCTGAGTACAAG                         AGGATACACGGGGTCAAAGCTTTCAAACAATATCGAATGTGAAATATTTCA
genomic: GTGGTGCTTCAAACCGACAACTCTGTGTTGTATGACCGCCTGAGTACAAGgtagtgatgt ... tgtgtggcagAGGATACACGGGGTCAAAGCTTTCAAACAATATCGAATGTGAAATATTTCA