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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAATCATTAGTTCCATGGAAGACCCGGAGAAGATCTTAGAACAAACTGTGCTTGAAATGAATGATGACTTGATAAAAATGCGTCAGGCCACAGCACAAgtaagcttgatgatctcatttttgcttgtgttgcttaacgttaataattcttgcttcttcgttgttccacctttttattttccctttatttcttccttct...

Basic information

species Vitis vinifera
transcript Vv05s0094g00150.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0094g00150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G017077_T01 (Zea mays), 5'ss of exon 3
TGCAATCATTAGTTCCATGGAAGACCCGGAGAAGATCTTAGAACAAACTGTGCTTGAAATGAATGATGACTTGATAAAAATGCGTCAGGCCACAGCACAAgtaagct-tgatgat-ctcatttttgcttgtgttgcttaacgttaataattcttgcttcttcgttgttccacctttttattttccctttatttcttccttct
|||| |  | |||||  | |||||||| ||||||||  |||| ||  | || || || |||||||||||||||| ||| ||||| |||||||| ||||| ||  | | ||||     ||| | |   |  |  ||| |    ||  |      |  | |     || |     ||     |||      ||||  | ||   
TGCAGTTCTAAGTTCGTTTGAAGACCCTGAGAAGATTCTAGACCAGGCAGTTCTGGAGATGAATGATGACTTGACAAAGATGCGGCAGGCCACTGCACAGgtttgttgtgattgcattcagtataattgatagtgcattttatttttttccaatagtgccataatgctgtcttttccaggttttaacacattttcttcta--

upper sequence: Vv05s0094g00150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G05330.1 (Glycine max), 5'ss of exon 3
TGCAATCATTAGTTCCATGGAAGACCCGGAGAAGATCTTAGAACAAACTGTGCTTGAAATGAATGATGACTTGATAAAAATGCGTCAGGCCACAGCACAAgtaagcttgatgatctcatttttgcttgtgttgcttaacgttaataattcttgcttcttc--gttgttccacctttttattttccctttatttcttccttct
 ||  || | |||||  | ||||| |||||||| || || || ||| |||||||||||||||| || |||||||  ||||||||||| || || |||||||| || |  |   | |  || |  ||| ||||  |  |  ||  |   |  |   |       || |   |  ||  | | ||   ||  ||  ||| ||  
CGCTGTCTTAAGTTCGTTTGAAGATCCGGAGAAAATATTGGAGCAAGCTGTGCTTGAAATGAACGACGACTTGACCAAAATGCGTCAAGCTACTGCACAAgttagttgcaatttttttttatctcttttgtttttggatttttttttataataaataaaaaaattatcgtatgttggtttgttttgttctttcgttcatt--

upper sequence: Vv05s0094g00150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G13300.1 (Glycine max), 5'ss of exon 3
TGCAATCATTAGTTCCATGGAAGACCCGGAGAAGATCTTAGAACAAACTGTGCTTGAAATGAATGATGACTTGATAAAAATGCGTCAGGCCACAGCACAAgtaagcttgatgatctcatttttgcttgtgttgcttaacgttaataattcttgcttcttcgttgttccacctttttattttccctttatttcttccttct----
 ||  || | || ||  | ||||| |||||||| || || || ||| |||||||||||||||| || |||||||  ||||||||||| || || |||||||| || |  |  ||    |||       ||||| |     ||| |  ||      | ||| ||    |||  ||||| | |     |  || | | |  |    
CGCTGTCTTAAGCTCGTTTGAAGATCCGGAGAAAATATTGGAGCAAGCTGTGCTTGAAATGAACGACGACTTGACCAAAATGCGTCAAGCTACTGCACAAgttagtt--acaattatttttagaaaaatgttgtt--gtattagttgtttccttgtgttctttcaatcactattttactcttataattgttttgcttgtttgag

upper sequence: Vv05s0094g00150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S22_267V6.1 (Physcomitrella patens), 5'ss of exon 4
TGCAATCATTAGTTCCATGGAAGACCCGGAGAAGATCTTAGAACAAACTGTGCTTGAAATGAATGATGACTTGATAAAAATGCGTCAGGCCACAGCACAAgtaagcttgatgatctcatttttgcttgtgttgcttaacgttaataattcttgct-tcttcgttgttc-cacctttttattt-tccctttatttcttccttct
||| ||  | || ||    |||||||| || ||| |  | || || |||||| | ||||||||||| ||| |||||||||||||||||||  | ||||| ||   |||| |  |   |  |||  | | | |  | |  |   |    | |   | |    |||| |   |  | | ||| | |   | ||| | |   |   
TGCTATAGTGAGCTCAGCTGAAGACCCTGAAAAGTTACTGGATCAGACTGTGTTGGAAATGAATGAAGACCTGATAAAAATGCGTCAGGCATCGGCACAGgtt--cttgttttttcgaacttttttggagataat-agtgcagagggatatgattgtgaatgttggtaatatatatatatatatatatatatatatatatata