Sequence
atgc intronic sequence ATGC exonic sequenceATGCCAGGTACAATAATGGCAATGGGACGGCTCAATCGACCTAGTATTATGGTTTATGGTGGAGCTATCAAGgttagatatccttggttattgaaagttctttatataagtggaagtcttatattgcatttctaagtgctatgtttaacttgcaaaactttgtcattagttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os08g44530.1 (Oryza sativa), 5'ss of exon 2
ATGCCAGGTACAATAATGGCAATGGGACGGCTCAATCGACCTAGTATTATGGTTTATGGTGGAGCTATCAAGgttagatatccttggttattgaaagttct-ttatataagtggaagtcttatattgcatttctaagtgctatgtttaacttgcaaaactttgtcattagttt
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ATGCCAGGAACAATAATGGCAATGGGGCGGCTGAACCGACCAAGTATCATGATATATGGTGGAACTATTAAGgtaattcatctctgttcttttgatgtaggattgtattaatatttgaagtaatttgaagatgttagtgccagatacaa-taaaacaacctttttatgcatag
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G014069_T01 (Zea mays), 5'ss of exon 2
ATGCCAGGTACAATAATGGCAATGGGACGGCTCAATCGACCTAGTATTATGGTTTATGGTGGAGCTATCAAGgttagatatccttggttattgaaagttctttatataagtggaagtcttatattgcatttctaagtgctatgtttaacttgcaaaactttgtcattagttt----
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ATGCCAGGTACAATAATGGCAATGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAGgtaatgctcccctggtctcttgctgtattattactaattctaaa----atgtgctgttcttcaacagaatgtttggctagcttgagtaagcaaaagacatttgt
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AC234528.1_FGT005 (Zea mays), 5'ss of exon 2
ATGCCAGGTACAATAATGGCAATGGGACGGCTCAATCGACCTAGTATTATGGTTTATGGTGGAGCTATCAAGgtta-gatatccttggttattgaaagttctttatataagtggaagtcttatattgca---tttctaagtgctatgtttaacttgcaaaactttgtcattagttt
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ATGCCAGGTACAATAATGGCAATGGGACGGCTTAATCGACCTAGCATAATGATATATGGTGGAACTATTAAGgtaatgctctcctggtctcttgctgacttgctgtattataactaattctgaaatgtgctgttcttcaacaggatgtttggcttgcttgaataggcaaata----
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ18570 (Selaginella moellendorffii), 5'ss of exon 2
ATGCCAGGTACAATAATGGCAATGGGACGGCTCAATCGACCTAGTATTATGGTTTATGGTGGAGCTATCAAGgttagatatccttggttattgaaagttctttatataagtggaagtcttatattgcatttctaagtgctatgtttaacttgcaaaactttgtcattagttt
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ATGCCAGGAACTCTCATTGCAATGGGAAGGCTGAATCGACCAAGTATTATGGTTTACGGAGGAACTATCAAAgtaagttttctct--ttctttttggtttcttttgttcgtgcttg-ctgaaagtgttggttcag-------------------------------------
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ36478 (Selaginella moellendorffii), 5'ss of exon 2
ATGCCAGGTACAATAATGGCAATGGGACGGCTCAATCGACCTAGTATTATGGTTTATGGTGGAGCTATCAAGgttagatatccttggttattgaaagttctttatataagtggaagtcttatattgcatttctaagtgctatgtttaacttgcaaaactttgtcattagttt
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ATGCCAGGAACTCTCATTGCAATGGGAAGGCTGAATCGACCAAGTATTATGGTTTACGGAGGAACTATCAAAgtaagttttctct--ttgtttttggtttcttttgttcgtgcttg-ctgaaagtgttggttcag-------------------------------------
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ36479 (Selaginella moellendorffii), 5'ss of exon 2
ATGCCAGGTACAATAATGGCAATGGGACGGCTCAATCGACCTAGTATTATGGTTTATGGTGGAGCTATCAAGgttagatatccttggttattgaaagttctttatataagtggaagtcttatattgcatttctaagtgctatgtttaacttgcaaaactttgtcattagttt
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-------GAACTCTCATTGCGATGGGAAGGCTGAATCGACCAAGTATTATGGTTTACGGAGGAACTATCAAAgtaagctttctcttatcgttttggtttcttt-tgttcgcgcttg-ctgaaagtgttggttcag-------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351021650|gb|FQ430537.1|FQ430537EST: TGGGACGGCTCAATCGGCCTAGTATTATGGTTTATGGTGGAGCTATCAAG CCTGGTCATTTTCAAGGCCATACTTACGACATAATATCTGCCTTTCAG
genomic: TGGGACGGCTCAATCGACCTAGTATTATGGTTTATGGTGGAGCTATCAAGgttagatatc ... tcatatgcagCCTGGTCATTTTCAAGGCCATACTTACGACATAATATCTGCCTTTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCCAGGTACAATAATGGCAATGGGACGGCTCAATCGACCTAGTATTATGGTTTATGGTGGAGCTATCAAGgttagatatccttggttattgaaagttctttatataagtggaagtcttatattgcatttctaagtgctatgtttaacttgcaaaactttgtcattagttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaac