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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACAGACAACTCTTCATTTATCTCCTCAGATTTATATGAGTTCTTGTTATCATCCCTTCCTAATATAGTTAAAGGGTGCCAATGGGTGCTTCTGTACAGgtgagttttgctaacaaagtaatagcctgcataagttgctcttgtatttggtttttgattcagctctgatcgtttaaaatgaagggcag

Basic information

species Vitis vinifera
transcript Vv05s0049g01850.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689747|gb|EC943735.1|EC943735
EST:     TCATCCCTTCCTAATATAGTTAAAGGGTGCCAATGGGTGCTGCTGTACAG                         TACGTTGAAACATGGTATATCACTCCGCACACTTATTCGTAAGAGTGCTGA
genomic: TCATCCCTTCCTAATATAGTTAAAGGGTGCCAATGGGTGCTTCTGTACAGgtgagttttg ... tgaagggcagTACGTTGAAACATGGTATATCACTCCGCACACTTATTCGTAAGAGTGCTGA