1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCATGTTCTCGAAAGGAAGGATGGAGAAATGGCATGGCAAGGTATGATGGAACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAGgtaggttcttactttgtctttgacaaacatgtaaatgctagctttaacatgcggacaatgtgttagggcaaattattagcttgtacagtataatttattg...
species | Vitis vinifera |
transcript | Vv05s0020g04870.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAG AATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCCEST: gi|30252882|gb|CB970433.1|CB970433
genomic: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAGgtaggttctt ... tctttatcagAATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCC
EST: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAG AATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCCEST: gi|110389589|gb|EC954442.1|EC954442
genomic: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAGgtaggttctt ... tctttatcagAATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCC
EST: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAG AATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCCEST: gi|161718153|gb|FC065659.1|FC065659
genomic: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAGgtaggttctt ... tctttatcagAATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCC
EST: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAG AATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCCEST: gi|161719072|gb|FC065699.1|FC065699
genomic: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAGgtaggttctt ... tctttatcagAATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCC
EST: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAG AATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCCEST: gi|37185234|gb|CF604587.1|CF604587
genomic: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAGgtaggttctt ... tctttatcagAATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCC
EST: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGACCCCGAG AATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCCEST: gi|110688125|gb|EE066317.1|EE066317
genomic: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAGgtaggttctt ... tctttatcagAATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCC
EST: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAG AATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGANGATGCAACTCCCEST: gi|33409206|gb|CF214833.1|CF214833
genomic: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAGgtaggttctt ... tctttatcagAATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCC
EST: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAG AATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCC
genomic: AACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAGgtaggttctt ... tctttatcagAATGGCCCCACTGTGTATCGTAGCAGAACTGTATTTGAGGATGCAACTCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGTTCTCGAAAGGAAGGATGGAGAAATGGCATGGCAAGGTATGATGGAACGGTCAACCCCAAATATGTCATACCAAGCTTGGCGCCATGAGCCCGAGgtaggttcttactttgtctttgacaaacatgtaaatgctagctttaacatgcggacaatgtgttagggcaaattattagcttgtacagtataatttattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggcaaa