Sequence
atgc intronic sequence ATGC exonic sequenceGATGGGCTACAAGAACCCTGTCCTCTTACTTCATCCATTAGGAGGCTATACAAAGGCAGATGATGTTCCGCTTGGTTGGAGAATGAAGCAACATGAGAAGgttcatgaactgatcctatgatgtattgctcaatttgaaaatcagttatccctctgccagaagggtccattatgtaattgccttaccttcagttctaattctgattaatattgaaaatgttcctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g53230.1 (Oryza sativa), 5'ss of exon 2
GATGGGCTACAAGAACCCTGTCCTCTTACTTCATCCATTAGGAGGCTATACAAAGGCAGATGATGTTCCGCTTGGTTGGAGAATGAAGCAACATGAGAAGg-----ttcatgaactgatcctatgatgtattgctcaatttgaaaat-ca-gttatccctctgcca--gaagggtccatt--atgtaattgccttaccttcagttctaattc-tgattaatattga-aaatgttcctcag-----
|||||| ||||| || ||||| || | ||||||||||| ||||| | ||||| ||||||||||| || ||| |||||||||||||||| ||||| |||| || | || | | ||| || | |||| || ||| | || || | ||||| || ||||| | ||| | || | ||||| || ||| |||| |||| |
GATGGGTTACAAAAATCCTGTTCTTCTGCTTCATCCATTGGGAGGATTCACAAAAGCAGATGATGTGCCTCTTAGTTGGAGAATGAAGCAGCATGAAAAGgtacgctttaagagtagcaatcgtactgtcaaatctttttagcaaatgcatgttggtgccttgttgttgatgaaaccatttgatttaattacactactgtaaggcccaattcatgcacaattttgatgcgtgtttattttggtag
upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G051270_T02 (Zea mays), 5'ss of exon 3
GATGGGCTACAAGAACCCTGTCCTCTTACTTCATCCATTAGGAGGCTATACAAAGGCAGATGATGTTCCGCTTGGTTGGAGAATGAAGCAACATGAGAAGgttcatgaactgatcctatgatgtattgctcaatttgaaaatcagttatccctctgccagaagggtccattatgtaattgccttaccttcagttctaattctgattaatattgaaaatgttcctcag
|||||| || || |||||||| || | || |||||| | ||||| | ||||| ||||||||||| || ||| |||||||||||||||||||||||||||| | ||| |||| || ||| || | ||| | | | | | |||| | || | ||| | | ||||| | |
GATGGGTTATAAAAACCCTGTTCTTCTGCTCCATCCACTGGGAGGATTCACAAAAGCAGATGATGTGCCTCTTAGTTGGAGAATGAAGCAACATGAGAAGgtattta----gatgctataattatactctcccctttcatctcaaattctcaataattgg-------cttcatgttttctccgcagtagcagctatgtctctgaactaaac----------------
upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G149952_T01 (Zea mays), 5'ss of exon 2
GATGGGCTACAAGAACCCTGTCCTCTTACTTCATCCATTAGGAGGCTATACAAAGGCAGATGATGTTCCGCTTGGTTGGAGAATGAAGCAACATGAGAAGgttcatgaactgatc-ctatgatgtattgctcaatttgaaaatcagtta--tccctctgccagaagggtccattatgtaattgccttaccttcagttctaattctgattaatattgaaaatgttcctcag
|||||| || || |||||||| || | || |||||| | ||||| | ||||| ||||||||||| || ||| |||||||||||||||||||||||||||| ||| | | | | | || | | ||| | | ||| | | | ||| ||| ||| | | || | | |
GATGGGTTATAAAAACCCTGTTCTTCTGCTCCATCCACTGGGAGGATTCACAAAAGCAGATGATGTGCCTCTTAGTTGGAGAATGAAGCAACATGAGAAGgtatccagctggatagttctactcttccctttcatctcagaataattgggttccatgtccttgaactaaacatcttgttttgatgggatctgctatgtca------------------------------
upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G38760.1 (Glycine max), 5'ss of exon 2
GATGGGCTACAAGAACCCTGTCCTCTTACTTCATCCATTAGGAGGCTATACAAAGGCAGATGATGTTCCGCTTGGTTGGAGAATGAAGCAACATGAGAAGgttcatgaactgatcctatgatgtattgctcaatttgaaaatcagt-tatccctctgccagaagggtccattatgtaattgccttaccttcagttctaattctgattaatattgaaaatgttcctcag
||||||||| ||||| ||||||||||| ||||||||| | |||||||| || || || |||||||| || |||| |||| |||||||||||||||||||||| || || | || || || |||| | | | || | ||| | | | | | || || || || || ||
GATGGGCTATAAGAATCCTGTCCTCTTGCTTCATCCACTTGGAGGCTACACCAAAGCTGATGATGTCCCACTTGATTGGCGAATGAAGCAACATGAGAAGgtgtgtg--tcaatttctt--tgcctttttctatttaattgtaatcgcattggtttgctactt---ttcttggcacacacgcacattgtttgtctccaaagatgctt---------------------
upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G28980.2 (Glycine max), 5'ss of exon 2
GATGGGCTACAAGAACCCTGTCCTCTTACTTCATCCATTAGGAGGCTATACAAAGGCAGATGATGTTCCGCTTGGTTGGAGAATGAAGCAACATGAGAAGgttcatgaactgatcctatgatgtattgctcaatttgaaaatcagttatccctctgccagaagggtccattatgtaattgccttaccttcagttctaattctgattaatattgaaaatgttcctcag
|||||| || ||||| ||||||||||| ||||||||| | |||||||| || || || |||||||| || |||| |||| ||||||| |||||||||||||| ||| | | | | || | | | | | ||| || || || | || ||| | | || || |||| | | | |
GATGGGTTATAAGAATCCTGTCCTCTTGCTTCATCCACTGGGAGGCTACACCAAAGCTGATGATGTCCCACTTGATTGGCGAATGAAACAACATGAGAAGgtgtgtgatgt-actaaaccaaatacttttatagtctca---tggttgaagctatgtca--------ctttctgtgcctttttctgttttgattgtaatctttgctt-tgcta--------------
upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G22890.1 (Arabidopsis thaliana), 5'ss of exon 2
GATGGGCTACAAGAACCCTGTCCTCTTACTTCATCCATTAGGAGGCTATACAAAGGCAGATGATGTTCCGCTTGGTTGGAGAATGAAGCAACATGAGAAGgttcatgaactgatcctatgatgtattgctcaatttgaaaatcagttatccctctgccagaagggtccattatgtaattgccttaccttcagttctaattctgattaatattgaaaatgttcctcag
|||||| ||||| |||||| | || || |||||||| ||||| || | ||||||||| ||||||||||| | | |||||| ||||||||||| |||||||| | || | || || ||| | ||| |||| | ||| | | | | ||| | | | ||| || | |||
GATGGGTTACAAAAACCCTATTCTTTTGCTTCATCCGTTAGGTGGGTTTACAAAGGCTGATGATGTTCCTTTAGATTGGAGGATGAAGCAACACGAGAAGgtaaaaaaagttattgattgttgtgtgtctc---ttgagtgtgagt-gtgtgtat-cttgaaatgctaaatgtgtttatgaatgtaaaacag-----------------------------------
upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G14680.1 (Arabidopsis thaliana), 5'ss of exon 2
GATGGGCTACAAGAACCCTGTCCTCTTACTTCATCCATTAGGAGGCTATACAAAGGCAGATGATGTTCCGCTTGGTTGGAGAATGAAGCAACATGAGAAGgttcatgaactgatcctatgatgtattgctcaatttgaaaatcagttatccctctgccagaagggtccattatgtaattgccttaccttcagttctaattctgattaatattgaaaatgttcctcag
|||||| || || |||||| |||| || ||||||||||| ||||| | |||||| || ||||||||||| || | ||| ||||||| || || |||||||| || ||| || | | | | || ||| | || | | | | | | | | || | | ||| | |
GATGGGTTATAAAAACCCTATCCTTTTGCTTCATCCATTGGGAGGGTTTACAAAAGCTGATGATGTTCCTCTAAGCTGGCGAATGAAACAGCACGAGAAGgt--attaacggaatcaaagtcttttt-------ttgcgtgttgtttgctagttcattataggagatgctgaattggttttcatgacttgattag--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714062|gb|FC063798.1|FC063798EST: CAAAGGCAGATGATGTTCCGCTTGGTTGGAGAATGAAGCAACATGAGAAG GTGCTTGAAGATGGGGTTCTTGATCCAGAGACAACTGTAGTTTCTATTTTC
genomic: CAAAGGCAGATGATGTTCCGCTTGGTTGGAGAATGAAGCAACATGAGAAGgttcatgaac ... tgttcctcagGTGCTTGAAGATGGGGTTCTTGATCCAGAGACAACTGTAGTTTCTATTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGGGCTACAAGAACCCTGTCCTCTTACTTCATCCATTAGGAGGCTATACAAAGGCAGATGATGTTCCGCTTGGTTGGAGAATGAAGCAACATGAGAAGgttcatgaactgatcctatgatgtattgctcaatttgaaaatcagttatccctctgccagaagggtccattatgtaattgccttaccttcagttctaattctgattaatattgaaaatgttcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA