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GCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGGCGGAAGCTGGAGAGGCTGAGGATTTGCTTCGCCACTTGGGTATCCCGgtactctcatactcctcccgcaaatccatatgctctattctgcaaccccaactcaattattatcatcatctctgattatccaagttcaattattgatggg...
species | Vitis vinifera |
transcript | Vv05s0020g00880.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGCGGAAGCTGGAGAGGCTGAGGATTTGCTTCGCCACTTGGGTATCCCG GGTCCTTTTTCATCAAGATATTCACCACGTGGCATATTTTGTAGCCGTACAEST: gi|352763403|gb|FQ471715.1|FQ471715
genomic: GGGCGGAAGCTGGAGAGGCTGAGGATTTGCTTCGCCACTTGGGTATCCCGgtactctcat ... tgatatgcagGGTCCTTTTTCATCAAGATATTCACCACGTGGCATATTTTGTAGCCGTACA
EST: GGGCGGAAGCTGGAGAGGCTGAGGATTTGCTTCGCCACTTGGGTATCCCG GGTCCTTTTTCATCAAGATATTCACCACGTGGCATATTTTGTAGCCGTACAEST: gi|352776896|gb|FQ474203.1|FQ474203
genomic: GGGCGGAAGCTGGAGAGGCTGAGGATTTGCTTCGCCACTTGGGTATCCCGgtactctcat ... tgatatgcagGGTCCTTTTTCATCAAGATATTCACCACGTGGCATATTTTGTAGCCGTACA
EST: GCGGAAGCTGGAGAGGCTGAGGATTTGCTTCCGC-ACTTGGGGTATCCCG GGTCCCTTTTCATCAACATATTCACCACGTGACACACTTTGTAGCCGTACAEST: gi|352773984|gb|FQ473116.1|FQ473116
genomic: GCGGAAGCTGGAGAGGCTGAGGATTTGCTTC-GCCACTTGGG-TATCCCGgtactctcat ... tgatatgcagGGTCCTTTTTCATCAAGATATTCACCACGTGGCATATTTTGTAGCCGTACA
EST: GGGCGGAAGCTGGAGAGGCTGAGGATTTGCTTCGCCACTTGGGTATCCCG GGTCCTTTTTCATCAAGATATTCACCACGTGGCATATTTTGTAGCCGTACAEST: gi|352772410|gb|FQ469935.1|FQ469935
genomic: GGGCGGAAGCTGGAGAGGCTGAGGATTTGCTTCGCCACTTGGGTATCCCGgtactctcat ... tgatatgcagGGTCCTTTTTCATCAAGATATTCACCACGTGGCATATTTTGTAGCCGTACA
EST: GGGCGGAAGCTGGAGAGGCTGAGGATTTGCTTCGCCACTTGGGTATCCCG GGTCCTTTTTCATCAAGATATTCACCACGTGGCATATTTTGTAGCCGTACA
genomic: GGGCGGAAGCTGGAGAGGCTGAGGATTTGCTTCGCCACTTGGGTATCCCGgtactctcat ... tgatatgcagGGTCCTTTTTCATCAAGATATTCACCACGTGGCATATTTTGTAGCCGTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGGCGGAAGCTGGAGAGGCTGAGGATTTGCTTCGCCACTTGGGTATCCCGgtactctcatactcctcccgcaaatccatatgctctattctgcaaccccaactcaattattatcatcatctctgattatccaagttcaattattgatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccaac