Sequence
atgc intronic sequence ATGC exonic sequenceTATTTGAAACAATGTCTCGTGTCTATGTGGGAAATTTGGATCCACGAGTTACTGAGCGAGAACTTGAAGATGAGTTTCGTGTTTTTGGAGTTATAAGGAGgtataacaattttgaaatcttcctttaaaatatttgattaactagcattcagttacttctcagatttctgtttgctgtttagatgcttttctcagttact...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g54770.1 (Oryza sativa), 5'ss of exon 2
TATTTGAA-ACAATGTCTCGTGTCTATGTGGGAAATTTGGATCCACGAGTTACTGAGCGAGAACTTGAAGATGAGTTTCGTGTTTTTGGAGTTATAAGGAGgt--ataacaattttg--aaatcttcc-tttaaaatatttgattaactagcattca-gttacttctcag-atttctgtttgctgtttagatgcttttctcagttact
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-ATTTGTTCACGATGGCCCGCTTGTATGTTGGCAACTTGGATCCCCGAGTGACTTCCGGGGAACTTGAAGATGAGTTTCGTGTGTTTGGAGTTCTGCGAAGgtcagtttctgcctaggcaatttttccacttcatctaattgggtgtttggtttttgcattgtgctgcattagtcttgtgtagtttttggatagactagtt-------
upper sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G31580.1 (Arabidopsis thaliana), 5'ss of exon 2
TATTTGAAACAATGTCTCGTGTCTATGTGGGAAATTTGGATCCACGAGTTACTGAGCGAGAACTTGAAGATGAGTTTCGTGTTTTTGGAGTTATAAGGAGgtataa--caattttga-aatc--ttcctttaaaatatttgattaactagcattcagttacttctcagatt---tctgtttgctgtttagatgcttttctcagttact
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TTACAGAAGTAATGTCACGTGTGTACGTCGGAAATTTGGACCCGCGAGTTACTGAGCGTGAACTTGAGGATGAGTTCCGTGCCTTTGGAGTTGTCAGGAGgtaagaatcaatccaatcaatcagttcgcgctacaattttgtcacttttgaagttaaaagtatccaattttgcatctctctaatgttcatatgtaatgtgcag-----
upper sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G24590.1 (Arabidopsis thaliana), 5'ss of exon 2
--TATTTGAAACAATGTCTCGTGTCTATGTGGGAAATTTGGATCCACGAGTTACTGAGCGAGAACTTGAAGATGAGTTTCGTGTTTTTGGAGTTATAAGGAGgtataacaattttgaaatcttcctttaaaatatttgattaactagcattcagttacttctcagat-ttctgtttgctgtttagatgcttttctcagttact
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GTAACTTGAGG--ATGTCGCGTGTGTATGTTGGTAATTTGGATCCGCGAGTTACTGAACGTGAACTCGAGGATGAGTTTCGTTCCTTTGGTGTGATCAGGAGgtacataaatt--ga----ctcctttttggtttttagttgatgtaaagtgtgtgaatttgcatttatcctcattgttcttttggtgtctgtg-cag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37190703|gb|CF610052.1|CF610052EST: ACTGAGCGAGAACTTGAAGATGAGTTTCGTGTTTTTGGAGTTATAAGGAG TGTCTGGGTTGCACGCAGACCACCAGGCTATGCTTTTATCGACTTTGATGA
genomic: ACTGAGCGAGAACTTGAAGATGAGTTTCGTGTTTTTGGAGTTATAAGGAGgtataacaat ... ttatgtgcagTGTCTGGGTTGCACGCAGACCACCAGGCTATGCTTTTATCGACTTTGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTTGAAACAATGTCTCGTGTCTATGTGGGAAATTTGGATCCACGAGTTACTGAGCGAGAACTTGAAGATGAGTTTCGTGTTTTTGGAGTTATAAGGAGgtataacaattttgaaatcttcctttaaaatatttgattaactagcattcagttacttctcagatttctgtttgctgtttagatgcttttctcagttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG