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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCGTAACCGGAGTTCCAGGTTCTTTCTATGGCAGGCTCTTCCCCAGCGAAAGTCTTCATTTTATCCATTCTTCTTACAGTCTCCACTGGCTGTCTCATgtgaatctttgctcttaattaaatagtggttcaatcgttcattaagaagaaagcatgtcagttagaagtttcaatcgttcatcag

Basic information

species Vitis vinifera
transcript Vv04s0023g02310.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02310.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G24810.1 (Glycine max), 5'ss of exon 2
TTTCGTAACCGGAGTTCCAGGTTCTTTCTATGGCAGGCTCTTCCCCAGCGAAAGTCTTCATTTTATCCATTCTTCTTACAGTCTCCACTGGCTGTCTCATgtgaatctttgctcttaattaaatagtggttcaatcgttcattaagaagaaagcatgtcagt-tagaagtttcaatcgttcatcag--------------
 | | |    || ||||| |||||||||||||||||| | ||||| |   |||||||||||||| ||||||| ||||| || || |||||||| ||| | ||  |      | |  |   | | |    |  |    |  ||  | |   |   || |   | || |  | |  ||   | || |               
CTACTTCTATGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCACTGGCTATCTAAGgtacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatataataaaatatttttcttact

upper sequence: Vv04s0023g02310.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G24800.1 (Glycine max), 5'ss of exon 2
TTTCGTAACCGGAGTTCCAGGTTCTTTCTATGGCAGGCTCTTCCCCAGCGAAAGTCTTCATTTTATCCATTCTTCTTACAGTCTCCACTGGCTGTCTCATgtgaatctttgctcttaattaaatagtggttcaatcgttcattaagaagaaagcatgtca--gttagaagtttcaatcgttcatcag-----------------------------------------------------------------------
 | | |    || ||||| |||||||||||||||||| | ||||| |   |||||||||||||| ||||||| ||||| || || || ||||| ||| | ||  |  | |     ||  |   |  |  ||| ||   | ||||  |   || |   |||   ||||   |||     ||     ||                                                                       
CTACTTCTATGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacacatatatatatatattgct--tacttctattagt-attagaagtgaaactaatcaaaattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag

upper sequence: Vv04s0023g02310.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 1
TTTCGTAACCGGAGTTCCAGGTTCTTTCTATGGCAGGCTCTTCCCCAGCGAAAGTCTTCATTTTATCCATTCTTCTTACAGTCTCCACTGGCTGTCTCATgtgaatctttgctcttaattaaatagtggttcaatcgttcattaagaagaaagcatgtca--gttagaagtttcaatcgttcatcag-----------------------------------------------------------------------
 | | |  | || ||||| |||||||||||||||||| | ||||| |   |||||||||||||| ||||||| ||||| || || || ||||| ||| | ||  || | |     ||  |   |  |  ||| ||   | ||||  |   || |   |||   ||||   |||     ||     ||                                                                       
CTACTTCTCTGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacatatatatatatatattgct--tacttctattagt-attagaagtgaaactcatcaaaattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag

upper sequence: Vv04s0023g02310.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G24740.1 (Glycine max), 5'ss of exon 2
TTTCGTAACCGGAGTTCCAGGTTCTTTCTATGGCAGGCTCTTCCCCAGCGAAAGTCTTCATTTTATCCATTCTTCTTACAGTCTCCACTGGCTGTCTCATgtga--atctttgctcttaattaaatagtggttcaatcgttcattaagaagaaagcatgtcagttaga--agtttcaatcgttcatcag-----------
 | | |    || | |||||||||||||||||||||| | ||| | | | ||||| | |||||||||||||| ||||| || || || ||||| ||| | ||    || | |     ||  || |||    |  |    |  ||  | |   |   || | |||| ||      |   |  ||  |  |           
CTACTTCTTTGGTGCTCCAGGTTCTTTCTATGGCAGGATTTTCTCAAACCAAAGTGTGCATTTTATCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtaggtatatatatatatatatatatatatatatatatatatatatatatatatatatattagttcgattgacatttgtattttgtaggagagtttaacc