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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagttttaatctcacctgcttccaagtttgggtatctgtgaatggattgttgaagagggtagaggcaatcttatggtaccaggtcatattgctgacag...

Basic information

species Vitis vinifera
transcript Vv04s0023g02050.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110408581|gb|EC974217.1|EC974217
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|27584281|gb|CB006976.1|CB006976
EST:     TAGAGATTGGACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: TAGAGATTGGACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|30137621|gb|CB922959.1|CB922959
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110725005|gb|EE101327.1|EE101327
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110714201|gb|EE090834.1|EE090834
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110395524|gb|EC961190.1|EC961190
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110383428|gb|EC947801.1|EC947801
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110421372|gb|EC987668.1|EC987668
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|71883819|gb|DT032874.1|DT032874
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|32460779|gb|CD801953.1|CD801953
EST:     TTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: TTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|30130758|gb|CB916097.1|CB916097
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110392954|gb|EC957638.1|EC957638
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|30126419|gb|CB911758.1|CB911758
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|27582989|gb|CB005684.1|CB005684
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110716413|gb|EE091375.1|EE091375
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|30130907|gb|CB916246.1|CB916246
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|30130760|gb|CB916099.1|CB916099
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110396411|gb|EC962096.1|EC962096
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|71889039|gb|DT038094.1|DT038094
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110729884|gb|EE106328.1|EE106328
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|30137252|gb|CB922590.1|CB922590
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110377712|gb|EC942793.1|EC942793
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110395846|gb|EC961519.1|EC961519
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|27586186|gb|CB008881.1|CB008881
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110687657|gb|EE065313.1|EE065313
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110686674|gb|EE064578.1|EE064578
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|351029910|gb|FQ427750.1|FQ427750
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110421893|gb|EC988197.1|EC988197
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|27584608|gb|CB007303.1|CB007303
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|18458436|gb|BM436714.1|BM436714
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|349829323|gb|FQ419855.1|FQ419855
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110370067|gb|EC934244.1|EC934244
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110716422|gb|EE091391.1|EE091391
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|22012437|gb|BQ797471.1|BQ797471
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|27584381|gb|CB007076.1|CB007076
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|349830764|gb|FQ417062.1|FQ417062
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110393667|gb|EC959071.1|EC959071
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|71887667|gb|DT036722.1|DT036722
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|27582243|gb|CB004938.1|CB004938
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|27586396|gb|CB009091.1|CB009091
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|18458205|gb|BM436483.1|BM436483
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|71866481|gb|DT015536.1|DT015536
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110728877|gb|EE104831.1|EE104831
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110385769|gb|EC950321.1|EC950321
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110695196|gb|EE072933.1|EE072933
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|22015144|gb|BQ800178.1|BQ800178
EST:     TCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: TCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110393379|gb|EC958573.1|EC958573
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110385050|gb|EC949535.1|EC949535
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|30135495|gb|CB920833.1|CB920833
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110423715|gb|EC990066.1|EC990066
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110395733|gb|EC961404.1|EC961404
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110405584|gb|EC971127.1|EC971127
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|37183453|gb|CF602807.1|CF602807
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110697619|gb|EE074766.1|EE074766
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110415749|gb|EC981681.1|EC981681
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110411133|gb|EC976835.1|EC976835
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110722998|gb|EE099804.1|EE099804
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|30137253|gb|CB922591.1|CB922591
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110393789|gb|EC959280.1|EC959280
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|349833327|gb|FQ416705.1|FQ416705
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|351025456|gb|FQ435148.1|FQ435148
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110418356|gb|EC984503.1|EC984503
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|351018517|gb|FQ424624.1|FQ424624
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|30127119|gb|CB912458.1|CB912458
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|30125675|gb|CB911014.1|CB911014
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|110715188|gb|EE092949.1|EE092949
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
EST: gi|30128077|gb|CB913416.1|CB913416
EST:     GACCGGGTGCTCCATCAGTTTTCAATTGC                         GTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA
genomic: GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagtttta ... ttttgggcagGTAGTTGAAATTGGCAAGGGCAGCAAGGTTAAGTATGAGCTTGACAAAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCGGGTGCTCCATCAGTTTTCAATTGCgtaagttttaatctcacctgcttccaagtttgggtatctgtgaatggattgttgaagagggtagaggcaatcttatggtaccaggtcatattgctgacag

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