1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CATGTTTATGTAAGATTGCACAAGGGTCAGACAATTGATGATATAAGTGAAGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAGgcaaaatatgctcagactctttttttatttatttttattacattttgttttcacgtatttgtctatttaatctatgtggtctagcaagtattctacctca...
species | Vitis vinifera |
transcript | Vv04s0008g03810.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAG GCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTAAEST: gi|34549359|gb|CF517591.1|CF517591
genomic: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAGgcaaaatatg ... tacatggcagGCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTGA
EST: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAG GCAACAAGGTGAACAATGTTGACGTCGTATACACGATC-ATGGCACAATCTEST: gi|110715789|gb|EE094238.1|EE094238
genomic: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAGgcaaaatatg ... tacatggcagGCAACAAGGTGAACAATGTTGACGTCGTATACAC--TCCATGGCACAATCT
EST: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAG GCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTAAEST: gi|110710049|gb|EE086042.1|EE086042
genomic: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAGgcaaaatatg ... tacatggcagGCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTGA
EST: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAG GCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTAAEST: gi|30128520|gb|CB913859.1|CB913859
genomic: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAGgcaaaatatg ... tacatggcagGCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTGA
EST: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAG GCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTAAEST: gi|161721392|gb|FC070768.1|FC070768
genomic: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAGgcaaaatatg ... tacatggcagGCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTGA
EST: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAG GCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTAAEST: gi|110357353|gb|EC920834.1|EC920834
genomic: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAGgcaaaatatg ... tacatggcagGCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTGA
EST: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAG GCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTAAEST: gi|27583079|gb|CB005774.1|CB005774
genomic: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAGgcaaaatatg ... tacatggcagGCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTGA
EST: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAG GCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTAA
genomic: AGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAGgcaaaatatg ... tacatggcagGCAACAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTTTATGTAAGATTGCACAAGGGTCAGACAATTGATGATATAAGTGAAGGTTTACTGGAGGATTGTGCTCAGCTTGTCAAAGCAAACTCCATCCAAGgcaaaatatgctcagactctttttttatttatttttattacattttgttttcacgtatttgtctatttaatctatgtggtctagcaagtattctacctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA