1 5' 3' | 2 5' 3' | 3 5' 3' |
GAATTGTTTCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGGgtaaagaaagtaactgtttgattgggaattgaaggaaaaggggagaaagcggaatctgaatctggttcttttagcggtgttgttctgttttgatttttga...
species | Vitis vinifera |
transcript | Vv04s0008g01260.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGG AGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCGEST: gi|352794662|gb|FQ475160.1|FQ475160
genomic: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGGgtaaagaaag ... gataaaacagAGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCG
EST: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGG AGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCGEST: gi|161705797|gb|FC056668.1|FC056668
genomic: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGGgtaaagaaag ... gataaaacagAGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCG
EST: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGG AGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCGEST: gi|352777867|gb|FQ466920.1|FQ466920
genomic: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGGgtaaagaaag ... gataaaacagAGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCG
EST: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGG AGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCGEST: gi|294964322|gb|GW838125.1|GW838125
genomic: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGGgtaaagaaag ... gataaaacagAGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCG
EST: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGG AGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCGEST: gi|110686005|gb|EE063219.1|EE063219
genomic: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGGgtaaagaaag ... gataaaacagAGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCG
EST: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGG AGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCGEST: gi|33407784|gb|CF213411.1|CF213411
genomic: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGGgtaaagaaag ... gataaaacagAGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCG
EST: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGG AGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCGEST: gi|161715784|gb|FC065151.1|FC065151
genomic: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGGgtaaagaaag ... gataaaacagAGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCG
EST: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGG AGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCGEST: gi|351017415|gb|FQ435768.1|FQ435768
genomic: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGGgtaaagaaag ... gataaaacagAGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCG
EST: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGG AGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCGEST: gi|161714515|gb|FC062965.1|FC062965
genomic: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGGgtaaagaaag ... gataaaacagAGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCG
EST: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGG AGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCG
genomic: TCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGGgtaaagaaag ... gataaaacagAGTCGATGCTACGGACAATTTCTCAATCTATGGCCACAACGAGTTGCGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTGTTTCCGGTGCTTTCCTTTGGACGGTTGAAGGGAAAGACCATGATTTTTTCGGgtaaagaaagtaactgtttgattgggaattgaaggaaaaggggagaaagcggaatctgaatctggttcttttagcggtgttgttctgttttgatttttga
- - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagaaa