Sequence
atgc intronic sequence ATGC exonic sequenceTGGGTGTGGTGGGACTATGTGACTGATTTTCAAATTAGATGTCCCATGAGGAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAGgtaaataatatatccttgcatcctctgattgtaaggataccagtcatattgattaataattttttatttctaatgttggttctgcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 5'ss of exon 2
TGGGTGTGGTGGGACTATGTGACTGATTTTCAAATTAGATGTCCCATGAGGAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAGgtaaataa----tatatccttgcatcctctgattgtaaggataccagtcatattg-attaataattttttatttctaatgttggttctgcacag------
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TGGATCTGGTGGGATTATGTAACTGATTTTCACATAAGGTGCCCAATGAAGGACAAAAAGTATAACAAGAAATGTGCAGAAACTGTCATCAAATCACTAGgttggttcttcttttgtttctgagactttcctttgcataatgataagcatgattgtagtaattacttgtacgtacttaaattggacgtttgaaatatgcc
upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 2
TGGGTGTGGTGGGACTATGTGACTGATTTTCAAATTAGATGTCCCATGAGGAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAGgtaaataatatatccttgcatcctctgattgtaaggataccagtcatat-tgattaataattttttatttctaa-tgttggttctgcacag---------
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TGGGTCTGGTGGGATTATGTGACTGATTTTCACATAAGGTGTCCAATGAAGGAGAAGAAGTACAATAAAAAATGTGCAGAAACTGTCATCAAATCACTAGgtttgctccgttttctttcctcgcttacttaagaatccacattgtatatatattttgtaaaaacatgtttgtaagtttttaacatgcttggcacccactt
upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G27000.1 (Glycine max), 5'ss of exon 2
TGGGTGTGGTGGGACTATGTGACTGATTTTCAAATTAGATGTCCCATGAGGAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAGgtaaataa------tatatccttgc---atcctctgattgtaag-gataccagtcatattgat-taataattttttatttctaatgttggttctgcacag------
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TGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAAAAATATAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTGgcaagtgaatctgttatttgcttattatgttttctgttagtagttgatgatgacttctcaaatatgattattcagtatctcaaatatgattattcaatatctgcag
upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G45380.1 (Glycine max), 5'ss of exon 2
TGGGTGTGGTGGGACTATGTGACTGATTTTCAAATTAGATGTCCCATGAGGAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAGgtaaataatatatccttgcatcctctgattgtaaggataccagtcatattgattaataattttttatttctaatgttggttctgcacag
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TGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCCATGAAGGAGAAGAAGTACAATAAGGAATGTGCAAATGCTGTTATTAAATCACTGGgtaaataaatcaccatcgcacgctatttttatc----ttacagcatggctgatgatgactttactattacgtttgttcgatatctgcag
upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G40340.1 (Glycine max), 5'ss of exon 2
TGGGTGTGGTGGGACTATGTGACTGATTTTCAAATTAGATGTCCCATGAGGAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAGgtaaataa------tatatccttg-catcctctgattgtaaggataccagt--catattgatta--ataattttttatttctaatgttggttctgcacag------
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TGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAAAAGTATAACAAGAAATGTGCTGATGCTGTCATTGAATCACTTGgcaagtgaatctattatttgcttatcatgttttcctttagtggttgaggatgacttctcaattatgattattcagtatctcaaatatgattattcaatatctgcag
upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 2
TGGGTGTGGTGGGACTATGTGACTGATTTTCAAATTAGATGTCCCATGAGGAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAGgtaaataatat-atccttgcatcctctgattgtaaggataccagtcatattga-ttaataattttttatttctaatgttggttctgcacag
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TGGGTGTGGTGGGATTATGTCACTGATTTTCAAATTAGATGCCCCATGAAGGACAACAAGTACAATAAGGAATGTGCAAATGCTGTTATTAAATCACTGGgtaaattaaatcaccatcgcatcttatttttatcttacagggggtgataatgactttactattgcgtttcttcaatatttgcag-------
upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G14740.2 (Arabidopsis thaliana), 5'ss of exon 2
TGGGTGTGGTGGGACTATGTGACTGATTTTCAAATTAGATGTCCCATGAGGAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAGgtaaataatatatccttgcatcctctgattgtaaggataccagtcatattgattaataattttttatttctaatgttggttctgcacag
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TGGGTCTGGTGGGATTATGTTACTGATTTCCAGATCAGATGTCCCATGAAGGAGAAGAAATACAATAAGGAGTGTGCTGATTCCGTTATCAAATCTCTTGgtgagtg---tgtctgt-tatatgcaaatta-aagaaagacaattttggggag-aatgatgcatagttacta-tgtctttacag-----
upper sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G14720.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGGTGTGGTGGGACTATGTGACTGATTTTCAAATTAGATGTCCCATGAGGAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAGgtaaataatatatccttgcatcctctgattgtaaggataccagtcatatt--gattaataattttttatttctaatgttggttctgcacag
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TGGGTCTGGTGGGATTATGTTACTGATTTCCAGATCAGATGTCCAATGAAGGAGAAAAAATACAACAAAGATTGTGCTGAGTCTGTAATCAAATCTCTTGgtgagtgtt-tcttcttacaggtctcgatagttgaaagaaaagcaatttttgggagaatgaggtcatattttctatgtatgtccc-tacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30299749|gb|CB976543.1|CB976543EST: GAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAG GGCTTGATAGTAAAAAGATTGAANAGANTATGGGAGACCCAAATGCCGATT
genomic: GAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAGgtaaataata ... ttctgcacagGGCTTGATAGTAAAAAGATTGAAAAGTGTATGGGAGATTCAAATGCCGATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGTGTGGTGGGACTATGTGACTGATTTTCAAATTAGATGTCCCATGAGGAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAGgtaaataatatatccttgcatcctctgattgtaaggataccagtcatattgattaataattttttatttctaatgttggttctgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA