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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAAATGAATGGCATCTATTGTTCAAGTAGGCCCATGAGAATTGGTGTGGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccattctctgagtgttaaaatcatattgcaatatctttgatctgtgagttttacataaagtacatttgatttttttgttttatgctgattgatt...

Basic information

species Vitis vinifera
transcript Vv03s0063g00850.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27585725|gb|CB008420.1|CB008420
EST:     CCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: CCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|30127264|gb|CB912603.1|CB912603
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110358590|gb|EC922912.1|EC922912
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|46918297|gb|CN547626.1|CN547626
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110365355|gb|EC928212.1|EC928212
EST:     GGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|30253349|gb|CB970900.1|CB970900
EST:     AGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: AGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|30253272|gb|CB970823.1|CB970823
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|30301226|gb|CB978020.1|CB978020
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110711731|gb|EE088548.1|EE088548
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGGAATGCACCAAATGGTGCAGTGGCCCAAGGTC
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110716935|gb|EE092352.1|EE092352
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110358130|gb|EC922123.1|EC922123
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110385108|gb|EC949601.1|EC949601
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110385313|gb|EC949825.1|EC949825
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110702788|gb|EE079064.1|EE079064
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110357598|gb|EC921807.1|EC921807
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110372319|gb|EC936474.1|EC936474
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110364091|gb|EC927736.1|EC927736
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110378975|gb|EC944138.1|EC944138
EST:     CCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: CCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110360333|gb|EC923326.1|EC923326
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|161721355|gb|FC070755.1|FC070755
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|30135627|gb|CB920965.1|CB920965
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATC-AATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|30134056|gb|CB919394.1|CB919394
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|351022708|gb|FQ428617.1|FQ428617
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|30129471|gb|CB914810.1|CB914810
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|161713787|gb|FC063781.1|FC063781
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|110696914|gb|EE073445.1|EE073445
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
EST: gi|30124953|gb|CB910292.1|CB910292
EST:     GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAG                         CTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT
genomic: GGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccat ... cttcaattagCTTTGGTTTTGGCTGGTGGAAATGCATCAAATGGTGCAGTGGCCCAAGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGAAATGAATGGCATCTATTGTTCAAGTAGGCCCATGAGAATTGGTGTGGCCACCCCCAAGAAGGCATCTGGTTATCAACAACAGTATTCTTCACAAGgtaataccattctctgagtgttaaaatcatattgcaatatctttgatctgtgagttttacataaagtacatttgatttttttgttttatgctgattgatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acataaag