1 5' 3' | 2 5' 3' |
CACATGTCCAGTGTCTCCCCTGGAAAGATTCAGAAAGTTGACCTGCACGAGGGTGACTGGGGCACTGTCGGCTCTGTCATCGAGTGGAGCTACGTTATTGgtaagccaactctcactccacaccacctctatccactcaacattatgtatatttttgcaaaaatgctttacatcatgaaataatctgctctttttataat...
species | Vitis vinifera |
transcript | Vv01s0011g05190.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGTGACTGGNGCAATGTCGGCTCTGTCATCGAGTGGAGCTACGTTATTG ATGGGAAAAATCATGTTGCTAAGGAGATTGTGGAAGCCATAGACAAGGAAAEST: gi|351043018|gb|FQ443860.1|FQ443860
genomic: GGGTGACTGGGGCACTGTCGGCTCTGTCATCGAGTGGAGCTACGTTATTGgtaagccaac ... gaaaccaaagATGGGAAAAATCATGTTGCTAAGGAGATTGTGGAAGCTATAGACAAGGAAA
EST: GGGTGACTGGGGCACTGTCGGCTCTGTCATCGAGTGGAGCTACGTTATTG ATGGGAAAAATCATGTTGCTAAGGAGATTGTGGAAGCTATAGACAAGGAAAEST: gi|160482167|gb|EY254980.1|EY254980
genomic: GGGTGACTGGGGCACTGTCGGCTCTGTCATCGAGTGGAGCTACGTTATTGgtaagccaac ... gaaaccaaagATGGGAAAAATCATGTTGCTAAGGAGATTGTGGAAGCTATAGACAAGGAAA
EST: GGGTGACTGGGGCACTGTCGGCTCTGTCATCGAGTGGAGCTACGTTATTG ATGGGAAAAATCATGTTGCTAAGGAGATTGTGGAAGCCATAGACAAGGAAAEST: gi|349814893|gb|FQ410116.1|FQ410116
genomic: GGGTGACTGGGGCACTGTCGGCTCTGTCATCGAGTGGAGCTACGTTATTGgtaagccaac ... gaaaccaaagATGGGAAAAATCATGTTGCTAAGGAGATTGTGGAAGCTATAGACAAGGAAA
EST: GGGTGACTGGGGCACTGTCGGCTCTGTCATCGAGTGGAGCTACGTTATTG ATGGGAAAAATCATGTTGCTAAGGAGATTGTGGAAGCTATAGACAAGGAAA
genomic: GGGTGACTGGGGCACTGTCGGCTCTGTCATCGAGTGGAGCTACGTTATTGgtaagccaac ... gaaaccaaagATGGGAAAAATCATGTTGCTAAGGAGATTGTGGAAGCTATAGACAAGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACATGTCCAGTGTCTCCCCTGGAAAGATTCAGAAAGTTGACCTGCACGAGGGTGACTGGGGCACTGTCGGCTCTGTCATCGAGTGGAGCTACGTTATTGgtaagccaactctcactccacaccacctctatccactcaacattatgtatatttttgcaaaaatgctttacatcatgaaataatctgctctttttataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataa