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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGATCAACTGCGCGTCACTCATGATTCATCTGCATTGCAAGTGCTAATTCTCCCAGAGgtatatactattttccctctctattcgaaaccatgtgtttggcctctgagaaaatgcaggaaaaagaaaacagcttatttttttcagtgtaacacttttc...

Basic information

species Vitis vinifera
transcript Vv01s0010g03610.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26260652|gb|CA811715.1|CA811715
EST:     TTGCAAGTGCTAATTCTCCCAGAG                         GAAGAGAAGATTAAGATGGGGTTTATAATGGAGTTTGCTGAGAA-TTGATT
genomic: TTGCAAGTGCTAATTCTCCCAGAGgtatatacta ... atttgttcagGAAGAGAAGATTAAGATGGGGTTTATAATGGAGTTTGCTGAGAATTTGATT
EST: gi|26261206|gb|CA812269.1|CA812269
EST:     ATGATTCATCTGCGTTGCAAGTGCTAATTCTCCCAGAG                         GAAGAGAAGATTAAGATGGGGTTTATAATGGAGTTTGCTGAGAA-TTGATT
genomic: ATGATTCATCTGCATTGCAAGTGCTAATTCTCCCAGAGgtatatacta ... atttgttcagGAAGAGAAGATTAAGATGGGGTTTATAATGGAGTTTGCTGAGAATTTGATT
EST: gi|110384344|gb|EC948774.1|EC948774
EST:     GCAAGTGCTAATTCTCCCAGAG                         GAAGAGAAGATTAAGATGGGGTTTATAATGGAGTTTGCTGAGAATTTGATT
genomic: GCAAGTGCTAATTCTCCCAGAGgtatatacta ... atttgttcagGAAGAGAAGATTAAGATGGGGTTTATAATGGAGTTTGCTGAGAATTTGATT
EST: gi|110409815|gb|EC975487.1|EC975487
EST:     GCAAGTGCTAATTCTCCCAGAG                         GAAGAGAAGATTAAGATGGGGTTTATAATGGAGTTTGCTGAGAATTTGATT
genomic: GCAAGTGCTAATTCTCCCAGAGgtatatacta ... atttgttcagGAAGAGAAGATTAAGATGGGGTTTATAATGGAGTTTGCTGAGAATTTGATT
EST: gi|110717809|gb|EE093989.1|EE093989
EST:     GCTAATTCTCCCGGAG                         GAAGGGAAGATTAAGATGGGGTTTATAATGGAGTTCGCTGAGAATTTGATT
genomic: GCTAATTCTCCCAGAGgtatatacta ... atttgttcagGAAGAGAAGATTAAGATGGGGTTTATAATGGAGTTTGCTGAGAATTTGATT
EST: gi|110727524|gb|EE104379.1|EE104379
EST:     CTAATTCTCCCAGAG                         GAAGAGAAGATTAAGATGGGGTTTATAATGGAGTTTGCTGAGAATTTGATT
genomic: CTAATTCTCCCAGAGgtatatacta ... atttgttcagGAAGAGAAGATTAAGATGGGGTTTATAATGGAGTTTGCTGAGAATTTGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATGATCAACTGCGCGTCACTCATGATTCATCTGCATTGCAAGTGCTAATTCTCCCAGAGgtatatactattttccctctctattcgaaaccatgtgtttggcctctgagaaaatgcaggaaaaagaaaacagcttatttttttcagtgtaacacttttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa