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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAAAGCATGAGCCACTAAGCTGGGATTCAAGAGTTTCCATAGCTCTCGATGTTGCAAGGGGAATGGAATATCTACATTATGGGgtatgtggttttcatttgattttccagccagtagaagtgtagaaacaacttgcagaatttttggaatggactccactttacctgtttattgtgtttcccctcttcatacag

Basic information

species Vitis vinifera
transcript Vv00s0361g00050.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0361g00050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G06620.1 (Glycine max), 5'ss of exon 4
---------GTCAAAAGCATGAGCCACTAAGCTGGGATTCAAGAGTTTCCATAGCTCTCGATGTTGCAAGGGGAATGGAATATCTACATTATGGGgtatgtggttttcatttgattttccagccagtagaagtgtagaaacaacttgcagaatttttggaatggactccactttacctgtttattgtgtttcccctcttcatacag----------
         |  |||| ||  ||||| | ||||||||||  ||  ||  |||||| || ||||||||||| ||| |||||||||||||| ||||||||| | || | | |   || ||      | |  || ||   ||   ||  |  ||     | ||||||| |    ||    || ||  |  || |   || |  | |||           
CTGATTTGGGAAAAAATCACAAGCCATTGAGCTGGGATTTGAGGCTTAGCATAGCGCTAGATGTTGCAAGAGGACTGGAATATCTACATCATGGGgtatatagtatac-tcaaatctt---attaatgaaattggtaaatttacacgtggagaacattgaatggaataagtttactttgatttcttcgtattttct-taaaaacaactcattgcag