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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCCAGTGTTTTTGGGGTATAACCTTCCTCCAGGGCATCCATGTGAAAATTTTGCATTGCCGCCCCCACCAGCCGATAAAAAACGAACTGGACCACGGCgtaagttttagttgttaaagctttttgggttttaaaatataataatgtgctgttgctatctctcacaaacatgtatttagttccaagatggcatctatgttgtagtttcgtcctaagacatatttatttatatcaatagatcttcaaattgctgagttcttgcttccttatgtttcag

Basic information

species Vitis vinifera
transcript Vv00s0265g00120.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G162884_T03 (Zea mays), 5'ss of exon 2
GCCCCAGTGTTTTTGGGGTATAACCTTCCTCCAGGGC-ATCCATGTGAAAATTTTGCATTGCCGCCCCCACCAGCCGATAAAAAACGAACTGGACCACGGCgtaagttttagttgttaaagctttttgggttttaaaatataataatgtgctgttgctatctctcacaaacatgtatttagttccaagatggcatctatgttgtagtttcgtcctaagacatatttatttatatcaatagatcttcaaattgctgagttcttgcttccttatgtttcag
    ||| |||||         |   |  |  |   | |||| |||||||| ||| ||||| | || |||||||  |||| |||||| ||||||||||| ||||||| |          |  ||  ||  |  |  |||  | |  |    |  | ||   ||| |   | ||||||||    |    || |                                                                                       
-ATGCAGAGTTTTCCACCGGCTATTGTTGTGGATCACCATCCTTGTGAAAACTTTTCATTGTCTCCTCCACCAGTTGATAGAAAACGCACTGGACCACGACgtaagtct----------acattcctgactactccaattcagtgctactttagttctgaatctaaacta-atgtattttaagcttgtatag---------------------------------------------------------------------------------------

upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AC233864.1_FGT014 (Zea mays), 5'ss of exon 2
GCCCCAGTGTTTTTGGGGTATAACCTTCCTCCAG-GGCATCCATGTGAAAATTTTGCATTGCCGCCCCCACCAGCCGATAAAAAACGAACTGGACCACGGCgtaagttttagttgttaaagctttttgggttttaaaatataataatgtgctgttgctatctctca-caaacatgtatttagttccaagatggcatctatgttgtagtttcgtcctaagacatatttatttatatcaatagatcttcaaattgctgagttcttgcttccttatgtttcag
    ||| |||||         |   |  |  |    ||||| |||||||| ||| ||||| | || |||||||  |||| |||||| ||||||||||| ||||||| |          |  ||  ||  |  |  |||  | |  |    |  | ||   ||| | | ||  | | || || |   | |     || |  ||||  ||| | |                                                                  
-ATGCAGAGTTTTCCACCGGCTATTGTTGTGGATCACCATCCTTGTGAAAACTTTTCATTGTCTCCTCCACCAGTTGATAGAAAACGCACTGGACCACGACgtaagtct----------acattcctgactactccaattcagtgctactttagttctgaatctaaactaatgtattttaagcttgtatagcttgtccagtttgttattt-gccag----------------------------------------------------------------

upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G08090.1 (Glycine max), 5'ss of exon 2
GCCCCAGTGTTTT-TGGGGTATAACCTTCCTCCAGGGCATCCATGTGAAAATTTTGCATTGCCGCCCCCACCAGCCGATAAAAAACGAACTGGACCACGGCgtaagttttagttgttaaagctttttgggttttaaaatataataatgtgctgttgctatctctcacaaacatgtatttagttccaagatggcatct-atgttgtagtttcgtcctaagacatatttattta--tatcaatagatcttcaaattgctgagttcttgcttccttatgtttcag
 ||    | |||| |||| || |  |||||| | || ||||| ||| | | |||  || | || || |||||||| |||||||| |||||||| |||||||||||| | | ||| |   |   | |||  | |  ||||||  |       ||||      | | |  |  |||| | | |  | | |||    | | | | | |||        | | | || ||   |||  ||    |||   |   |         || | ||||  || ||||||||
-CCGAGCTATTTTCTGGGTTACACTCTTCCTTCTGGTCATCCCTGTAATAGTTTCACACTTCCTCCTCCACCAGCAGATAAAAAGCGAACTGGGCCACGGCgtaagatcttgtttt---actatattgtttctgcaaatatctt------ttgttaggtaattttatgaggatgtttcttgagctaggataatttatgaggatatagaaggcatatga-atattttaggttacttagtgttagtggtatgatcctgaacattttggcttgtttgtgtttcag

upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G24770.1 (Glycine max), 5'ss of exon 2
GCCCCAGTGTTTTTGGGGTATAACCTTCCTCCAGGGCATCCATGTGAAAATTTTGCATTGCCGCCCCCACCAGCCGATAAAAAACGAACTGGACCACGGCgtaagttttagttgttaaagctttttgggttttaaaatataataatgtgctgttgctatctctcacaaacatgtatttagttccaagatggcatctatgttgtagtttcgtcctaagacatatttatttatatcaatagatcttcaaattgctgagttcttgcttccttatgtttcag
||       |||||||| ||    ||||||||||||||||| ||| | |  ||  || | || |||||||| || |||||||| || ||||| ||||| |||||||||||||| |   |  ||  ||| |   | |   |  | ||   || ||  |  | || |  ||  || | |   | |||  ||  |||  || |   |                                                                          
GCGGGTTATTTTTTGGGCTACCGTCTTCCTCCAGGGCATCCGTGTAATAGCTTCACACTCCCTCCCCCACCTGCTGATAAAAAGCGTACTGGGCCACGTCgtaagttttagtt-tactattttgctggataagatatctttcttatacactatt--tgacacttaataatttggaatagttcccatcatc-catgcatatatca--------------------------------------------------------------------------