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GAGATAAAGGAATCTGTGCAGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAGgtcagcatttctctctcatattcaataaaacatggttttttttttcattatttgtgtgtattcaaatatgaacttcaagaggaaataaggatcatactgg...
species | Vitis vinifera |
transcript | Vv19s0015g01390.t01 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: AGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAG GCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCAEST: gi|71874496|gb|DT023551.1|DT023551
genomic: AGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAGgtcagcattt ... ttgggtacagGCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCA
EST: AGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAG GCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCAEST: gi|77588863|gb|DV223674.1|DV223674
genomic: AGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAGgtcagcattt ... ttgggtacagGCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCA
EST: AGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAG GCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCAEST: gi|77589633|gb|DV224104.1|DV224104
genomic: AGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAGgtcagcattt ... ttgggtacagGCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCA
EST: AGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAG GCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCAEST: gi|71886269|gb|DT035324.1|DT035324
genomic: AGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAGgtcagcattt ... ttgggtacagGCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCA
EST: AGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAG GCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCAEST: gi|77588931|gb|DV223714.1|DV223714
genomic: AGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAGgtcagcattt ... ttgggtacagGCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCA
EST: AGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAG GCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCA
genomic: AGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAGgtcagcattt ... ttgggtacagGCTCTAGATGCTGCTTTTGCACATTATGATGCAGACCAACAGAAGAGATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATAAAGGAATCTGTGCAGTCTGATTTTAGGCATCAAGTTTCCCTCCTTGTTCAACCAATGCTTCAGgtcagcatttctctctcatattcaataaaacatggttttttttttcattatttgtgtgtattcaaatatgaacttcaagaggaaataaggatcatactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa