Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGAAGAGATCCATCCCACTGGAATGCTCAGTGTTGTTGCTAGTCTTACACCTTGGTCGGATCACAACCAGAGCCCGCGTAATATGTACCAGTGTCAGgttttttcttgcatgttgactgaaaaaggtcctataatgtattatgctcctgttatcttcaaatttaactaactgttgtgttttgttttcttctttttctcttaaaatgattggtag

Basic information

species Vitis vinifera
transcript Vv13s0084g00600.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GRMZM2G388892_T02 (Zea mays), 5'ss of exon 18
TCATGAAGAGATCCATCCCACTGGAATGCTCAGTGTTGTTGCTAGTCTTACACCTTGGTCGGATCACAACCAGAGCCCGCGTAATATGTACCAGTGTCAGgttttttcttgcatgttgactgaaaaaggtcctataatgtattat-gctcctgttatcttcaaatttaactaactgttgtgttttgttttcttctttttctcttaaaatgattggtag
||||||||||||||| || || |  || |||||||| ||||| | ||| ||||||||||| ||||||||||| || ||  | || |||||||| || ||||||  | ||   | ||     ||    |  | |||| ||  |  | | || || | || |    ||  ||||||         |  |  || |  ||| |                  
TCATGAAGAGATCCACCCTACAGCTATTCTCAGTGTAGTTGCCAATCTGACACCTTGGTCTGATCACAACCAAAGTCCTAGGAACATGTACCAATGCCAGgttagtactcagaagtca---gatcttgtccttatagtgattggttgatcatgctttccttt--ttggactaacccccag---tcatcctccttgtttgcag----------------

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA17G23500.1 (Glycine max), 5'ss of exon 13
TCATGAAGAGATCCATCCCACTGGAATGCTCAGTGTTGTTGCTAGTCTTACACCTTGGTCGGATCACAACCAGAGCCCGCGTAATATGTACCAGTGTCAGgttttttcttgcatgttgactgaaaaaggtcctataatgtattatgctcctgttatcttcaaatttaactaactgttgtgttttgttttcttctttttctcttaaaatgattggtag
||||||||| || ||||| || | |||||| ||||| ||||||| ||| ||||| ||||| ||||| || ||||| || || ||||||||||||||||||||| | |  | | | |  ||||     |||     |||    || | |     |||    | ||||   | ||| | | | | | | |  |                          
TCATGAAGAAATTCATCCAACAGTAATGCTTAGTGTAGTTGCTAATCTCACACCATGGTCAGATCATAATCAGAGTCCACGAAATATGTACCAGTGTCAGgttctataat-cttttgtactggtcttggtatccaaat---ctacgttagcagtatagctacatttttttcactctgggggtgtttatgatgtag----------------------

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA13G26190.1 (Glycine max), 5'ss of exon 22
TCATGAAGAGATCCATCCCACTGGAATGCTCAGTGTTGTTGCTAGTCTTACACCTTGGTCGGATCACAACCAGAGCCCGCGTAATATGTACCAGTGTCAGgttttttcttgcatgttgactgaaaaaggtcctataatgtattatgctcctgttatcttcaaatttaactaactgttgtgttttgttttcttctttttctcttaaaatgattggtag
||| ||||| || ||||| || | |||||| ||||| ||||||| ||| ||||| ||||| ||||| || ||||| || || ||||||||||||||||||||| | |  | | | |  |||      |||     ||| || | |     | ||| || ||| |||   | ||| | | | | | | |  |                          
TCACGAAGAAATTCATCCAACAGTAATGCTTAGTGTAGTTGCTAATCTCACACCATGGTCAGATCATAATCAGAGTCCACGAAATATGTACCAGTGTCAGgttctataat-cttttgtacttttcttggtatccaaatctactttagcagt-ttagctacaattttt-ttcactctgggggtgtttatgatgtag----------------------

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT1G29940.1 (Arabidopsis thaliana), 5'ss of exon 19
TCATGAAGAGATCCATCCCACTGGAATGCTCAGTGTTGTTGCTAGTCTTACACCTTGGTCGGATCACAACCAGAGCCCGCGTAATATGTACCAGTGTCAGgttttttcttgcatgttgactgaaaaaggtcctataatgtattatgctcctgttatcttcaaatttaactaactgttgtgttttgttttcttctttttctcttaaaatgattggtag
||| || || || ||||| || || ||| | ||||| ||||||| ||||||||||||||| ||||| ||||| || || ||||| ||||| ||||||||||| ||  || | |  | ||     |||  |  ||| ||    |||||| |||  |  ||    || || |  | ||| |                                      
TCACGAGGAAATTCATCCAACCGGGATGATAAGTGTGGTTGCTAATCTTACACCTTGGTCAGATCATAACCAAAGTCCCCGTAACATGTATCAGTGTCAGgtatta-ctagaaattcgat--gcaaattttttatgat----tatgctgctggaagtttt---ttaaattttcagttatacag----------------------------------

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: PP1S169_131V6.1 (Physcomitrella patens), 5'ss of exon 19
TCATGAAGAGATCCATCCCACTGGAATGCTCAGTGTTGTTGCTAGTCTTACACCTTGGTCGGATCACAACCAGAGCCCGCGTAATATGTACCAGTGTCAGgttttttcttgcatgttgactgaaaaaggtcctataatgta-ttatgctcctgttatcttc-aaatttaactaactgtt----------gtgttttgttttcttctttttctcttaa-aatgattggtag---------------------------------------------------
 |||||||||||  || |||| |   |  | ||||||||||| ||||| || || ||||| || ||||| || ||||| || || ||||||||||||||||| ||  ||          | | ||    |  |    | || | ||| |  |  | | | |     || | |   || |          ||  ||| ||||||| ||||||| ||   | || ||   |                                                    
ACATGAAGAGATAAATGCCACAGCCTTCTTAAGTGTTGTTGCGAGTCTCACGCCATGGTCAGACCACAATCAAAGCCCCCGCAACATGTACCAGTGTCAGgtcttgcctcaacccaaccccgcaatgcattttcctgtctagtcatgtttataatctttcccgggcttgattggttgatctagtgtacagtacttttttttcttttttttctttttttagtgcttcacataatgcacataattgtttttgctgataaaggatgtgtgaatgtgttttatag

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: EFJ24096 (Selaginella moellendorffii), 5'ss of exon 5
TCATGAAGAGATCCATCCCACTGGAATGCTCAGTGTTGTTGCTAGTCTTACACCTTGGTCGGATCACAACCAGAGCCCGCGTAATATGTACCAGTGTCAGgttttttcttgcatgttgactgaaaaaggtcctataatgtattatgctcctgttatcttcaaatttaactaactgttgtgttttgttttcttctttttctcttaaaatgattggtag
|||    ||  | ||||| || |  ||| | ||||| ||||| ||  | |||||||||||||||||||| || || || || |||||||||||||| ||||||| | |  ||                 | |  |||||| |  |  | ||   |  ||| |                                                       
TCACATTGAACTGCATCCGACGGCTATGTTGAGTGTGGTTGCAAGCTTAACACCTTGGTCGGATCACAATCAAAGTCCTCGAAATATGTACCAGTGCCAGgtttatacgagcgc---------------taccgtaatgtttagtttttctaacagtttctacag----------------------------------------------------

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: EFJ04457 (Selaginella moellendorffii), 5'ss of exon 18
TCATGAAGAGATCCATCCCACTGGAATGCTCAGTGTTGTTGCTAGTCTTACACCTTGGTCGGATCACAACCAGAGCCCGCGTAATATGTACCAGTGTCAGgttttttcttgcatgttgactgaaaaaggtcctataatgtattatgctcctgttatcttcaaatttaactaactgttgtgttttgttttcttctttttctcttaaaatgattggtag
|||    ||  | ||||| || |  ||| | ||||| ||||| ||    |||||||||||||||||||| || || || || |||||||||||||| ||||||| | |  ||       |      || |  | |||    || | |                                                                      
TCACATTGAACTGCATCCGACGGCTATGTTGAGTGTGGTTGCAAGCTCAACACCTTGGTCGGATCACAATCAAAGTCCTCGAAATATGTACCAGTGCCAGgtttatacgagcgctacatcacgtttagtttttctaacagtttctacag--------------------------------------------------------------------

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: EFJ35146 (Selaginella moellendorffii), 5'ss of exon 19
TCATGAAGAGATCCATCCCACTGGAATGCTCAGTGTTGTTGCTAGTCTTACACCTTGGTCGGATCACAACCAGAGCCCGCGTAATATGTACCAGTGTCAGgttttttcttgcatgttgactgaaaaaggtcctataatgtattatgctcctgttatcttcaaatttaactaactgttgtgttttgttttcttctttttctcttaaaatgattggtag
|||    ||  | ||||| || |  ||| | ||||| ||||| ||    |||||||||||||||||||| || || || || |||||||||||||| ||||||| | |  ||                 | |  |||||| |  |  | ||   |  ||| |                                                       
TCACATTGAACTGCATCCGACGGCTATGTTGAGTGTGGTTGCAAGCTCAACACCTTGGTCGGATCACAATCAAAGTCCTCGAAATATGTACCAGTGCCAGgtttatacgagcgc---------------taccgtaatgtttagtttttctaacagtttctacag----------------------------------------------------