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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATTGAAATCCATCTCTTTTGGGCTGGAAAAAGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAgtaatgcaattagaaactatttgatgcaaatcagtaactaaaatgttgatccactttcatactgatactgagtgattgctaaatttacacag

Basic information

species Vitis vinifera
transcript Vv12s0055g00580.t01
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00580.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: LOC_Os05g16824.3 (Oryza sativa), 5'ss of exon 17
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAAGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAgtaatgcaattagaaactatttgatgcaaatcagtaactaaaatgttgatccactttcatactgatactgagtgattgctaaatttacacag
| |||||| |||||||||||||||||||| ||| | ||||| ||||||||| |||||||    || |||||  | || |||||| | ||    || ||||||||       | ||  | |||  |  |   | | |||||  ||  |  |    | | ||    | |   | |   | |             
TTCATTGAGATCCATCTCTTTTGGGCTGGCAAAGGCACTTGTTGTGTACCTACTCAAGGTCACTACGGACCGACGATCTCAGCATTAAGCATCACTCCAAgtaag-----cacaatatttttagttga---ctgcaactaggattatattggcttcttatgtgtaaaaccattttcttcag-----------

upper sequence: Vv12s0055g00580.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA09G15200.1 (Glycine max), 5'ss of exon 17
TACATTGAAATCCATCTCTTTTGGGCTGGAAAAAGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAgtaatgca-attagaaac------------tatttgatgcaaatcagta-actaaaatgttgatccactttcatactgatactgagtgattgctaaatttacacag
||  | || |||||||||||||||||||||||| ||||||| ||| |||| | |||||| || ||||| ||    |||||||| || ||||||| |||| ||||  |  |  ||| ||            |||||| | ||||    ||    ||||||||| |     ||  | ||  |  ||  |  |   || | | |     
TATCTAGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGTTGTATACCAGTTCAAGGTACTTATGGGCCCCTGATTTCAGCCATTAGTGCTATCCCAGgtaaaacttaaaagagacaggcttttcatatatttggtccaaacacatacgtgaaaatgttgttttttatttttcctatttttgc-tagtcattatagtaa-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22011274|gb|BQ796308.1|BQ796308
EST:     TGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAA                         ATTTTGAGCCTACTGTGCCTAACACTGCTCCAAATGGGAAGAAGAATTGGA
genomic: TGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAgtaatgcaat ... atttacacagATTTTGAGCCTACTGTGCCTAACACTGCTCCAAATGGGAAGAAGAATTGGA