Sequence
atgc intronic sequence ATGC exonic sequenceGTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAAAAGCAGAGGAAGGCAGAAGCCAGAGCTAAGAAAgtattttaatctgctctttagcattttagggattttactgtttgaattatttgctttctgatgtattacaattttttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA15G01580.1 (Glycine max), 5'ss of exon 18
GTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAAAAGCAGAGGAAGGCAGAAGCCAGAGCTAAGAAAgtattttaatctgctctttagcattttagggattttactgtttgaattatttgctttctgatgtattacaat-tttttag
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GTTGACAACAGAGGAAGATAATGATCTGTCTAAGTTGCTTCCTTCTCAAAAAAAGAAAATGAGGCAAAAACAGAGGAAGGCAGAAGCAAGAGCTAAGAAAgtaataatccttgttttttctt-ctgtggggaaattcttgttggaaaagtattcatgctattgttttcccccctttttag
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA13G43760.1 (Glycine max), 5'ss of exon 18
GTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAAAAGCAGAGGAAGGCAGAAGCCAGAGCTAAGAAAgtattttaatctgctctttagcattt-tagggattttactgtttgaattat-ttgctttctgatgtattacaattttttag---------------
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GTCAACAGCCGAGGAAGATAATGACATGTCTAAGTTGCTTCCTTCTCAAAAAAAGAAAATGAGGCAAAAACAGAGAAAGGCAGAAGCAAGAGCTAAGAAAgtaat--aatcactgcttttgcttctgtggggaaattcttattggaaaagtattcatggctattgttcccccccccccccccccccccccccttag
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA08G22180.1 (Glycine max), 5'ss of exon 18
GTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAAAAGCAGAGGAAGGCAGAAGCCAGAGCTAAGAAAgtattttaatctgctctttagcattttagggattttactgtttgaattatttgctttctgatgtattacaat-tttttag
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GTCTACAGCAGAGGAAGATGATAATATGTCAAAGTTGCTTCCTTCTCAGAAGAAGAAAATGAGACAAAAGCAGAGAAAGGCAGAAGCAAGAGCCAAAAAGgtattgtagtcaatttctatagcttctgtggaactgcctgttggaaaggcattcaccctattgtttaattttgtttttag
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA07G03850.1 (Glycine max), 5'ss of exon 18
GTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAAAAGCAGAGGAAGGCAGAAGCCAGAGCTAAGAAAgtattttaatctgctctttagcattttagggattttactgtttgaattatttgctttctgatgtattacaattttttag
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GTCTACAGCAGAGGAAGATGATAATATGTCAAAGTTGCTTCCTTCTCAGAAGAAGAAAATGAGACAAAAGCAGAGAAAGGCAGAAGCAAGAGCCAAAAAGgtattgtagtcaatttctatagcttctgtggaactgcctgtgggaagcatttaccctactgtttaattttgtttttag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720397|gb|FC070189.1|FC070189EST: AAAAGAAAATGAGGCAAAAGCAGAGGAAGGCAGAAGCCAGATCTAAGAAA GAGGCAGAAGGAAAAAATGAGGAAACAAGTGCTAGTGGTGTCTCCAAGTCT
genomic: AAAAGAAAATGAGGCAAAAGCAGAGGAAGGCAGAAGCCAGAGCTAAGAAAgtattttaat ... aattttttagGAGGCAGAAGGAAAAAATGAGGAAACAAGTGCTAGTGGTGTCTCCAAGTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAAAAGCAGAGGAAGGCAGAAGCCAGAGCTAAGAAAgtattttaatctgctctttagcattttagggattttactgtttgaattatttgctttctgatgtattacaattttttag
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA