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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAATGGCTAGTTTTAAGAATAGAAATGCTCCAGAATCTGACTTTAGTCACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAGgtatctatagtcggttacaatggtctttttatccttcagagttcttccgtttgttaaaatgatttcgtttcttttttacacag

Basic information

species Vitis vinifera
transcript Vv09s0002g02430.t01
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30251150|gb|CB968883.1|CB968883
EST:     CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAG                         GGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
genomic: CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAGgtatctatag ... ttttacacagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
EST: gi|30300210|gb|CB977004.1|CB977004
EST:     CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAG                         GGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
genomic: CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAGgtatctatag ... ttttacacagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
EST: gi|219555446|gb|FG985059.1|FG985059
EST:     TACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAG                         GGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
genomic: CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAGgtatctatag ... ttttacacagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
EST: gi|110359216|gb|EC920349.1|EC920349
EST:     CCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAG                         GGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
genomic: CCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAGgtatctatag ... ttttacacagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
EST: gi|29785172|gb|CB341926.2|CB341926
EST:     CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAG                         GGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG
genomic: CACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAGgtatctatag ... ttttacacagGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACCGGCTCACAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGAATGGCTAGTTTTAAGAATAGAAATGCTCCAGAATCTGACTTTAGTCACTGCTGCTCTTCTCCTTGTTCTACTTCCCAAGGGTGTTGTAGTTCCAGgtatctatagtcggttacaatggtctttttatccttcagagttcttccgtttgttaaaatgatttcgtttcttttttacacag

- - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT