Sequence
atgc intronic sequence ATGC exonic sequenceTCACACTGGATTGGCCAAGAATATTACAAGAGGGGACCAGATGGAAATGATATTCGCAAGACAAATGTGCCTCATATCCGGGTGGAATTCCGTGAAACGgtatgggtttgattccgtcttttctcaagcgttgctatatatgcttttcagctttcatgctttaacatttttttaaggccttgtctggatctcagaaact...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: GLYMA01G29470.2 (Glycine max), 5'ss of exon 19
TCACACTGGATTGGCCAAGAATATTACAAGAGGGGACCAGATGGAAATGATATTCGCAAGACAAATGTGCCTCATATCCGGGTGGAATTCCGTGAAACGgtatgggtttgattccgtct---tttctcaagcgttgctatatatgcttttcagctttcatgctttaacatttttttaaggccttgtctggatctcagaaact
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TCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGACATTCAGAGAACAAACGTTCCTCACATCCGGTTGGAATTCCGTGATACGgtatggacttatttatggttaaattatttatataacttgttaca-gctgttaatttttcacacaattttaattaaattacactattcatgtatggttgaat--
upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: AT2G38280.1 (Arabidopsis thaliana), 5'ss of exon 18
TCACACTGGATTGGCCAAGAATATTACAAGAGGGGACCAGATGGAAATGATATTCGCAAGACAAATGTGCCTCATATCCGGGTGGAATTCCGTGAAACGgtatgggtttgattccgtcttttctcaagcgttgctatatatgcttttcagctttcatgctttaacatttttttaaggccttgtctggatctcagaaact
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TCGCACTGGATTGGAAAAGATTACTACAAAAGAGGACCTGATGGAAACGACATTCACAAAACAAACGTGCCACACATAAGGGTGGAGTTCCGTGACACGgtatggaatgaaatatatttattcttcacacaagttaatttctctttgtaggaaaacaaattaaaaatatgaagttgatgcag-----------------
upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 18
lower sequence: PP1S77_89V6.1 (Physcomitrella patens), 5'ss of exon 18
TCACACTGGATTGGCCAAGAATATTACAAGAGGGGACCAGATGGAAATGATATTCGCAAGACAAATGTGCCTCATATCCGGGTGGAATTCCGTGAAACGgtatgggtttgattccgtcttttctcaagcgtt-gctatatatgcttttcagctttcatgctttaacatttttttaa-ggcc---ttgtctggatctcagaaact-------------------------------------------
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ACACATTGGCTGGGGAAAAATTATTACAAGAGGGGTCCTGAGGGGAATGATATTCACAAGACCAATGTTCCTCATATGCGTGTGGAATTCCGTGATGAGgtaagaatactctcatactgcttgcagtacgtttgtcttccattacatgcgtctctgttattttgcggtattcgtgttggccgaattatctcaaa-tcagtgttcatgttctctactcatgtcaaccatttgtatgtttatccggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690987|gb|EC965565.1|EC965565EST: ATATTCGCAAGACAAATGTGCCTCATATCCGGGTGGAATTCCGTGAAACG ATCTGGAGAGAGGAAATGCAGCAGGTTTATCTGGGCAAATTCAAACTCCCT
genomic: ATATTCGCAAGACAAATGTGCCTCATATCCGGGTGGAATTCCGTGAAACGgtatgggttt ... tcatttgcagATCTGGAGAGAGGAAATGCAGCAGGTTTATCTGGGCAAATTCAAACTCCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCACACTGGATTGGCCAAGAATATTACAAGAGGGGACCAGATGGAAATGATATTCGCAAGACAAATGTGCCTCATATCCGGGTGGAATTCCGTGAAACGgtatgggtttgattccgtcttttctcaagcgttgctatatatgcttttcagctttcatgctttaacatttttttaaggccttgtctggatctcagaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcagaaa