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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTGAAAGAGTTCATTGGTGTTGCTGAGGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTGgtaatttgctaagcatttaactatatctttggtatattatgcgatgatgtcgatatgtataaagttgttcatgtctttaatcatcttttctcggtggacag

Basic information

species Vitis vinifera
transcript Vv17s0000g06640.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA04G32990.1 (Glycine max), 5'ss of exon 19
ACATTGAAAGAGTTCATTGGTGTTGCTGAGGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTGgtaatttgctaagcatttaactatatctttggtatattatgcgatgatgtcgatatgtataaagttgttcatgtctttaatcatcttttctcggtggacag
|||||||| || ||||||| |||||| |||  | ||||||  || || ||||| |||||||||||||||||||| ||||       |||| || ||||||| | ||||| |   | | |  |     |||||| |     |||         | |||| |  ||||||||
ACATTGAAGGAATTCATTGCTGTTGCAGAGTCAGAGGTGGTATCCGTAACAAACCTATATTCTGTGGTGgtaatatgct-------taaccatctctttggaagattatacataggtataaagggacataaagat-----tgt--------gtgttttatttgtggacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110700830|gb|EE077830.1|EE077830
EST:     GTGTTGCTGAGGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTG                         GGCAGAAATGCAGATGCACTTGCACTATATTTTGGCGAAGATCCTGTCCGC
genomic: GTGTTGCTGAGGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTGgtaatttgct ... cggtggacagGGCAGAAATGCAGATGCACTTGCACTATATTTTGGCGAGGATCCTGTCCGC
EST: gi|110700821|gb|EE077821.1|EE077821
EST:     GTGTTGCTGAGGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTG                         AGCAGAAATGCAGATGCACTTGCACTATATTTTGGCGAGGATCCTGTCCGC
genomic: GTGTTGCTGAGGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTGgtaatttgct ... cggtggacagGGCAGAAATGCAGATGCACTTGCACTATATTTTGGCGAGGATCCTGTCCGC
EST: gi|110700879|gb|EE077921.1|EE077921
EST:     GTGTTGCTGAAGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTG                         GGCAGAAATGCAGATGCACTTGCACTATATTTTGGCGAAGATCCTGTCCGC
genomic: GTGTTGCTGAGGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTGgtaatttgct ... cggtggacagGGCAGAAATGCAGATGCACTTGCACTATATTTTGGCGAGGATCCTGTCCGC
EST: gi|110700824|gb|EE077817.1|EE077817
EST:     GTGTTGCTGAAGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTG                         GGCAGAAATGCAGATGCACTTGCACTATATTTTGGCGAAGATCCTGTCCGC
genomic: GTGTTGCTGAGGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTGgtaatttgct ... cggtggacagGGCAGAAATGCAGATGCACTTGCACTATATTTTGGCGAGGATCCTGTCCGC