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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATATGCGGCGCAAGGTGGCCCTGAGTTCTTCTTCATTGTAAACATCCAGgtggattctctcttctgtttaatttgctttttctttcttttatttttattttctgatcttgctattgacaagaaccaagatatttaccacaaatattacaatgaaccag

Basic information

species Vitis vinifera
transcript Vv06s0004g02720.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GRMZM2G069976_T01 (Zea mays), 5'ss of exon 18
AAATATGCGGCGCAAGGTGGCCCTGAGTTCTTCTTCATTGTAAACATCCAGgtggattctctcttctgtttaatttgctttttctttcttttatttttattttctgatcttgctattgacaagaaccaagatatttaccacaaatattacaatgaac-cag
|||| ||| || ||||| ||| |    |||||||||||||||||||| |||||||| | | | || ||  |        | | | |   || ||  ||  | |    ||     ||  |||| ||   |  |  ||       ||      ||||   |||
AAATGTGCAGCACAAGGGGGCACCCGATTCTTCTTCATTGTAAACATTCAGgtggactattttttttgggtg-------tatacatgggttgatacttgatat---gtcacatgatgtacaacaatttaattccttgttt---atgactggatgagtacag

upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA13G40010.1 (Glycine max), 5'ss of exon 17
AAATATGCGGCGCAAGGTGGCCCTGAGTTCTTCTTCATTGTAAACATCCAGgtggattctctcttctgtttaatttgctttttctttcttttatttttattttctgatcttgctattgacaagaaccaagatatttaccacaaatattacaatgaaccag
|||||||| || || || || ||||||||||| |||||||||||||| |||||  |||     |  | ||    ||   || |          |    |       |  | | |  |   | ||||||                                
AAATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAGgtaaatttatagtcttcttgtgcttaggttgttacataaaattgagcacaacactaattaggtgattctatgaaccag-------------------------------