Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGAAATGCAGACTCCTTGTCCCAGTACTTTGGAGAAGATCCAGCTCGGTGTCCATTTGAGCAAGgtatggtgttatttttcttaatagttcagttcactttctataccagtcatatgaaaaggataacaaatttaaaatagttgtgtcctattttaaaataaac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA09G34830.1 (Glycine max), 5'ss of exon 17
GGAAGAAATGCAGACTCCTTGTCCCAGTACTTTGGAGAAGATCCAGCTCGGTGTCCATTTGAGCAAGgtatggtgttatttt---tcttaatagtt------cagttcactttctataccagt-catatgaaaaggataacaaatttaaaatagttgtgtcctattttaaaataaac
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GGAAGAAGTGCAGACTCTTTGTCCCAGTACTTTGGAGAGGATCCAGCTAGATGCCCTTTTGAACAAGgtctgatagtctctacaatctagacacatgcacaacacctgagtttttttaacattgtttttggtagcaatgattaatt--atatagaagggcccttgtttt--------
upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA04G14770.1 (Glycine max), 5'ss of exon 17
GGAAGAAATGCAGACTCCTTGTCCCAGTACTTTGGAGAAGATCCAGCTCGGTGTCCATTTGAGCAAGgtatggtgttatttt---tcttaata-gttcagttcac-----tttctataccagtcatatgaaaaggataacaaatttaaaatagttgtgtcctattttaaaataaac
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GGAAGAAGTGCAGACTCTTTGTCCCAGTACTTTGGGGAGGATCCAGCTAGATGCCCTTTTGAACAAGgtctgatgttctctacagtctagacacattcacaacacctgagtttttttaacctttatttcgttgcaatgattaatt--atgtagaagggcccttgttttg-------
upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT1G31810.1 (Arabidopsis thaliana), 5'ss of exon 17
GGAAGAAATGCAGACTCCTTGTCCCAGTACTTTGGAGAAGATCCAGCTCGGTGTCCATTTGAGCAAGgtatggtgttatttttcttaatagttcagttcactttctataccagtcatatgaaaaggataacaaatttaaaatagttgtgtcctattttaaaataaac--
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GGAAGAAATGCAGATTCTTTATCTCACTACTTCGGTGAGGATCCAGCTCGATGTCCTTTTGAGCAAGgtacattgacaaatctcttc----ttc--taaattgtctaagcca-ttgtgggacaaatgcaa-atattcattgatattctgaccaatgtttctatctgcag
upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: EFJ37653 (Selaginella moellendorffii), 5'ss of exon 16
GGAAGAAATGCAGACTCCTTGTCCCAGTACTTTGGAGAAGATCCAGCTCGGTGTCCATTTGAGCAAGgtatggtgttatttttcttaatagttcagttcactttctataccagtcatatgaaaaggataacaaatttaaaatagttgtgtcctattttaaaataaac
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GGCCACAATGCCGATTCCTTGGCGCGCTACTTCAATGAAGATCCCGCTCGCTGTCCATTTGAGCAAGgtacttaaccatttggtctat--atgcacttgattttacaaac-gtctgttggatttggttcgcag----------------------------------
upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: EFJ15040 (Selaginella moellendorffii), 5'ss of exon 16
GGAAGAAATGCAGACTCCTTGTCCCAGTACTTTGGAGAAGATCCAGCTCGGTGTCCATTTGAGCAAGgtatggtgttatttttcttaatagttcagttcactttctataccagtcatatgaaaaggataacaaatttaaaatagttgtgtcctattttaaaataaac
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GGCCACAATGCCGATTCCTTGGCGCGCTACTTCAATGAAGATCCCGCTCGCTGTCCATTTGAGCAAGgtacttaaccatttggtctat--atgcactggattttacaaacgtctcttg-gatttggttcgcag----------------------------------
upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: EFJ38305 (Selaginella moellendorffii), 5'ss of exon 13
GGAAGAAATGCAGACTCCTTGTCCCAGTACTTTGGAGAAGATCCAGCTCGGTGTCCATTTGAGCAAGgtatggtgttatttttcttaatagttcagttcactttctataccagtcatatgaaaaggataacaaatttaaaatagttgtgtcctattttaaaataaac
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GGCCACAATGCCGATTCCTTGGCGCGCTACTTCAATGAAGATCCCGCTCGCTGTCCATTTGAGCAAGgtacttaaccatttggtctat--atgcacttgattttacaaacgtctcttg-gatttggttcgcag----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22010858|gb|BQ795892.1|BQ795892EST: CTTGTCCCAGTACTTTGGAGAAGATCCAGCTCGGTGTCCATTTGAGCAAG TGACCCAAATCTTAGTTGTCTTCATTAAGACATTCAACAAGTCACGTGACG
genomic: CTTGTCCCAGTACTTTGGAGAAGATCCAGCTCGGTGTCCATTTGAGCAAGgtatggtgtt ... tgttttgcagTGACCCAAATCTTAGTCGTCTTCATTAAGACATTCAACAAGTCACGCGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGAAATGCAGACTCCTTGTCCCAGTACTTTGGAGAAGATCCAGCTCGGTGTCCATTTGAGCAAGgtatggtgttatttttcttaatagttcagttcactttctataccagtcatatgaaaaggataacaaatttaaaatagttgtgtcctattttaaaataaac
- - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa