1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ATTAGGATATTGTGTGGTGTGGATCATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccccatattttgaaaaattcgtttggtttgatttgttcttgttttgatccgtatttgaacccaatttctgtttgcaatcaacag
species | Vitis vinifera |
transcript | Vv00s0181g00120.t01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTAEST: gi|110362409|gb|EC925940.1|EC925940
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
EST: ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTAEST: gi|110731301|gb|EE105595.1|EE105595
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
EST: ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTAEST: gi|46910274|gb|CN545649.1|CN545649
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
EST: ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTAEST: gi|30298719|gb|CB975513.1|CB975513
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
EST: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA ACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTAEST: gi|27578479|gb|CB001174.1|CB001174
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
EST: ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTACTCCTTCAAAGGTAEST: gi|110381073|gb|EC946387.1|EC946387
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
EST: ATGATGATTTGAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCA ACTTTGATAGCAAAGAAGTCGCATTTCGCATTTAGTATTCCTTCAAAGGTA
genomic: ATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccc ... caatcaacagACTTTGATAGCAAAGAAGTCGCATTTCGCATATAGTACTCCTTCAAAGGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTAGGATATTGTGTGGTGTGGATCATGATGATTTAAAGCAGCTTTTCCATGTATCAAACACAATCAGAGACGCAgtaagttccccatattttgaaaaattcgtttggtttgatttgttcttgttttgatccgtatttgaacccaatttctgtttgcaatcaacag
- - - - - - - - - - - - - - - - - - - GCAGCT