Sequence
atgc intronic sequence ATGC exonic sequenceAGTAAACCCTCCAAAAGGTTGGCTTTATGTTCAACGCTTGCTTGTGGACCTGTTCAAATTCATGGAGCCATATCTAAGGAATGCTGAAATGGCAGAGCCGgtttgcttcttcagcttattgggtttaattatttgtcttttaaatatttcagagaatatattatttgctggcttttctatccttaattgtttgtttcaatttttttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0144g00010.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA07G14770.1 (Glycine max), 5'ss of exon 46
AGTAAACCCTCCAAAAGGTTGGCTTTATGTTCAACGCTTGCTTGTGGACCTGTTCAAATTCATGGAGCCATATCTAAGGAATGCTGAAATGGCAGAGCCGgtttgcttcttcagcttattgggtttaattatttgtcttttaaatatttcagagaatatattatttgctggcttttctatccttaattgtttgtttcaatttttttacag----
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TGGTAATGGTCAAAAAGGTTGGCCTTATATCCAAAGGTTGCTTGTAGATCTGTTCCAATTTATGGAGCCTTTTCTGAGGCATGCTGAACTTGGAGAACCGgtttgtctata-----tctcggtctcaattatttg-cttccaactgggtctatgcaca-ataat------gcttct-tacatctacattttttttaaaatctttttatgaccag
upper sequence: Vv00s0144g00010.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA03G27260.1 (Glycine max), 5'ss of exon 29
AGTAAACCCTCCAAAAGGTTGGCTTTATGTTCAACGCTTGCTTGTGGACCTGTTCAAATTCATGGAGCCATATCTAAGGAATGCTGAAATGGCAGAGCCGgtttgcttcttcagcttattgggtttaattatttgtcttttaaatatttcagagaatatattatttgctggcttttctatccttaattgtttgtttcaatttttttacag----
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TGGTAATGGTCAAAAAGGTTGGCCTTATATCCAAAGGTTGCTTGTAGATCTGTTCCAATTTATGGAGCCTTTTCTGAGGCATGCTGAACTAGGAGAACCGgtttgtctata-----tctcggcctcaattatttgcttccaactgggtctatgcacaataatgcttctta---catctacatttgtttttttttttgtacttttttatgaccag
upper sequence: Vv00s0144g00010.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA03G27270.1 (Glycine max), 5'ss of exon 46
AGTAAACCCTCCAAAAGGTTGGCTTTATGTTCAACGCTTGCTTGTGGACCTGTTCAAATTCATGGAGCCATATCTAAGGAATGCTGAAATGGCAGAGCCGgtttgcttcttcagcttattgggtttaattatttgtcttttaaatatttcagagaatatattatttgctggcttttctatccttaattgtttgtttcaatttttttacag----
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TGGTAATGGTCAAAAAGGTTGGCCTTATATCCAAAGGTTGCTTGTAGATCTGTTCCAATTTATGGAGCCTTTTCTGAGGCATGCTGAACTTGGAGAACCGgtttgtctata-----tcttggcctcaattatttg-cttccaactgggtctatgcacaa------taatgcttcttacatctacatttttttgtt--aacttttttatgaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34543098|gb|CF511330.1|CF511330EST: GTTC-AATTCATGGAGCCGTATCTAAGGAATGCTGAAATGGCAGAGCCG ATACTTTTTCTATATAAAGGCACTCTAAGGGTACTGCTTGTGCTGCTCCAT
genomic: GTTCAAATTCATGGAGCCATATCTAAGGAATGCTGAAATGGCAGAGCCGgtttgcttct ... ttttttacagATACTTTTTCTATATAAAGGCACTCTAAGGGTACTGCTTGTGCTGCTCCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTAAACCCTCCAAAAGGTTGGCTTTATGTTCAACGCTTGCTTGTGGACCTGTTCAAATTCATGGAGCCATATCTAAGGAATGCTGAAATGGCAGAGCCGgtttgcttcttcagcttattgggtttaattatttgtcttttaaatatttcagagaatatattatttgctggcttttctatccttaattgtttgtttcaatttttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG