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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATGATCCTCGTCTTATGACATTAGCTGGTTTGCGACGTAGGGGGGTGACTTCAACATCAATAAATACTTTTATTCGAGGAATTGGAATCACTAGAAGgttgggcatattttgtttgggcatatctaaagatttaccaaatatctttagtttcttatctttttatttggtattatcattgatattcattatactttgtggtacag

Basic information

species Vitis vinifera
transcript Vv15s0021g01230.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 16
GGGATGATCCTCGTCTTATGACATTAGCTGGTTTGCGACGTAGGGGGGTGACTTCAACATCAATAAATACTTTTATTCGAGGAATTGGAATCACTAGAAGgttgggcatattttgtttgggcatatctaaagatttaccaaatatctttagtttcttatctttttatttggtattatcattgatattcattatactttgtggtacag
|||||||||||||| | |||||| ||||||||||||| ||||| ||  ||||| ||||  |||| ||| ||||| | |||||||||||||| ||||||||||  |  ||   || | |    | |  |    || ||  |||||       ||||| |  | || || ||| |   |  |||| |    | | ||||||    | | 
GGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatgaatt-tctaactacagttgtttatataa-aaatact----atttctaagttattgatgtggaaaagtacttgaaacatctcacactttggttcata-

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 16
GGGATGATCCTCGTCTTATGACATTAGCTGGTTTGCGACGTAGGGGGGTGACTTCAACATCAATAAATACTTTTATTCGAGGAATTGGAATCACTAGAAGgttgggcatattttgtttgggcatatctaaagatttaccaaatatctttagtttcttatctttttatttggtattatcattgatattcattatactttgtggtacag
|||||||||||||| | |||||| ||||||||||||| ||||| ||  ||||  ||||  |||| ||| ||||| | |||||||||||||| ||||||||||  |  ||   || |      | | ||   | ||    ||||||  |   ||||| |  | || |  ||| |   |  |||| |    | |  ||||    || | 
GGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatcaatt-tccaactacagct---gtttgtataaatatact--atttctaagttattgacgtggaaaagtacttgaaacatctcactcttttgtttata-

upper sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 16
GGGATGATCCTCGTCTTATGACATTAGCTGGTTTGCGACGTAGGGGGGTGACTTCAACATCAATAAATACTTTTATTCGAGGAATTGGAATCACTAGAAGgttgg-gcatat-tttgtttgggcatatctaaagatttaccaaatatctttagtttcttatctttttatttggtattatcattgatattcattatactttgtggtacag
|||||||||| |||||| ||||| |  |||||||| |||| ||||| |||||||||||  | || ||| | ||| | ||||| ||||| || ||||||||||||   ||||| | | | ||   | |||  |  ||||  || || ||  |  | | |  |   | |  |   |||| |  |   | || |                  
GGGATGATCCACGTCTTTTGACACTTTCTGGTTTGAGACGGAGGGGTGTGACTTCAACTGCGATTAATGCATTTGTACGAGGCATTGGGATTACTAGAAGgttgctacatatatatatctgaatacatcatactatttggcatatgtcaattatctttgttaactctgctctctattgttct--gtgttaaag----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33404073|gb|CF209700.1|CF209700
EST:     ACTTCAACATCAATAAATACTTTTATTCGAGGAATTGGAATCACTAGAAG                         TGATTGTAGTATAATTCGTTTGGACCGCCTCGAGTATTATATAAGAGAAGA
genomic: ACTTCAACATCAATAAATACTTTTATTCGAGGAATTGGAATCACTAGAAGgttgggcata ... tgtggtacagTGATTGTAGTATAATTCGTTTGGACCGCCTCGAGTATTATATAAGAGAAGA