1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GATGCAGACAAGAAAGGATTATCTAAAATTGCTGAAGAGATCAAACATTTAGCACAGAAGGCCAAAGATAACAGCCTGAAATCTGAAGACTATGAGgtaactgcattaccttctaattggccatcaatggatggttgattgtatcatggtcttttaaatgaacttcatgatcatcatatatgcag
species | Vitis vinifera |
transcript | Vv11s0016g01870.t01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: ATTTAGCACAGAAGGCCAAAGATAACAGCCTGAAATCTGAAGACTATGAG GGAGGCACCTTTACTGTTTCGAACTTGGGAGGACCATTTGGAGTCAAACAAEST: gi|110361992|gb|EC925498.1|EC925498
genomic: ATTTAGCACAGAAGGCCAAAGATAACAGCCTGAAATCTGAAGACTATGAGgtaactgcat ... atatatgcagGGAGGCACCTTTACTGTTTCGAACTTGGGAGGACCATTTGGAGTCAAACAA
EST: ATTTAGCACAGAAGGCCAAAGATAACAGCCTGAAATCTGAAGACTATGAG GGAGGCACCTTTACTGTTTCGAACTTGGGAGGACCATTTGGAGTCAAACAAEST: gi|30131574|gb|CB916913.1|CB916913
genomic: ATTTAGCACAGAAGGCCAAAGATAACAGCCTGAAATCTGAAGACTATGAGgtaactgcat ... atatatgcagGGAGGCACCTTTACTGTTTCGAACTTGGGAGGACCATTTGGAGTCAAACAA
EST: ATTTAGCACAGAAGGCCAAAGATAACAGCCTGAAATCTGAAGACTATGAG GGAGGCACCTTTACTGTTTCGAACTTGGGAGGACCATTTGGAGTCAAACAA
genomic: ATTTAGCACAGAAGGCCAAAGATAACAGCCTGAAATCTGAAGACTATGAGgtaactgcat ... atatatgcagGGAGGCACCTTTACTGTTTCGAACTTGGGAGGACCATTTGGAGTCAAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCAGACAAGAAAGGATTATCTAAAATTGCTGAAGAGATCAAACATTTAGCACAGAAGGCCAAAGATAACAGCCTGAAATCTGAAGACTATGAGgtaactgcattaccttctaattggccatcaatggatggttgattgtatcatggtcttttaaatgaacttcatgatcatcatatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA