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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAGgtaaaatttggtttttttgaagaatgcaaatcatcatgagactaatgtatctttgttttcaggcatttatgatattgtttgtctataaatgcag

Basic information

species Vitis vinifera
transcript Vv06s0061g01040.t01
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390755|gb|EC955682.1|EC955682
EST:     AGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAG                         AGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
genomic: AGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAGgtaaaatttg ... ataaatgcagAGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
EST: gi|30133651|gb|CB918990.1|CB918990
EST:     CGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAG                         AGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
genomic: CGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAGgtaaaatttg ... ataaatgcagAGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
EST: gi|351016543|gb|FQ423970.1|FQ423970
EST:     GCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAG                         AGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
genomic: GCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAGgtaaaatttg ... ataaatgcagAGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
EST: gi|110374283|gb|EC938965.1|EC938965
EST:     GCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAG                         AGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
genomic: GCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAGgtaaaatttg ... ataaatgcagAGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
EST: gi|33404266|gb|CF209893.1|CF209893
EST:     GCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAG                         AGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
genomic: GCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAGgtaaaatttg ... ataaatgcagAGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
EST: gi|351021994|gb|FQ437781.1|FQ437781
EST:     GCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAG                         AGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
genomic: GCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAGgtaaaatttg ... ataaatgcagAGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
EST: gi|349814521|gb|FQ399161.1|FQ399161
EST:     GCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAG                         AGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
genomic: GCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAGgtaaaatttg ... ataaatgcagAGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
EST: gi|351049114|gb|FQ431658.1|FQ431658
EST:     GCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAG                         AGATGGTGTCAGTGAAAGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA
genomic: GCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAGgtaaaatttg ... ataaatgcagAGATGGTGTCAGTGAAGGTCAATTCAGTCAGGTTTTGCTGCATGAAATGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAGgtaaaatttggtttttttgaagaatgcaaatcatcatgagactaatgtatctttgttttcaggcatttatgatattgtttgtctataaatgcag

- - - - - - - - - - GCAGAT