Sequence
atgc intronic sequence ATGC exonic sequenceTGGGTTACTCTTGAAAAAGCTTGATAAGAAATTGGAAAGAACACTCCTGCATTCATATCGTAAGgtacacctactgtcaataattcaagataattgaactgttctcttcacaaataggtttgctttatttattattattattattattattattattatattta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03970.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA12G07980.1 (Glycine max), 5'ss of exon 15
TGGGTTACTCTTGAAAAAGCTTGATAAGAAATTGGAAAGAACACTCCTGCATTCATATCGTAAGgtacacctactgtcaataattcaagataattgaactgttctcttcacaaataggtt-tgctttatttat-tattattattattattattattattatattta
|||||| | |||||||||||||| |||||| | ||||||||||| | |||||||||||||||||| | | || | || || | | | | | | || ||| || | || |||| | | || | || ||| || | |
TGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGTAAGgtatttatgtttacatttatgtaaaaacttaaatataattttttggatgttagattctactcaattttcacacaagaatattctttgttaataatgaaaa--
upper sequence: Vv06s0004g03970.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA11G15470.3 (Glycine max), 5'ss of exon 8
TGGGTTACTCTTGAAAAAGCTTGATAAGAAATTGGAAAGAACACTCCTGCATTCATATCGTAAGgtacacctactgtcaataattcaagataattgaactgttctcttcacaaataggtttgctttatttattattattattattattattattatta-tattta-
|||||| | |||||||||||||| |||||| | ||||||||||| | ||||||||||| |||||| | | || | || || | | | || || | | | | || | | | || | | || | || ||| || | |
TGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGgtatttatgtttacatttatgtaaaaacttactataatttactggaggcttgattctact--gctcaattttcacacaagaatattctttgttaataatgaa
upper sequence: Vv06s0004g03970.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT3G46220.3 (Arabidopsis thaliana), 5'ss of exon 15
TGGGTTACTCTTGAAAAAGCTTGATAAGAAATTGGAAAGAACACTCCTGCATTCATATCGTAAGgtacacctactgtcaataattcaagataattgaactgttctcttcacaaataggtttgctttatttattattattattattattat-tattattatattta
||||||| ||||||| |||||||| || ||| ||||||| |||||||| |||||||||||||||||| ||| || | || | | | ||| | || | || |||||| | | | | | | | |||| ||| || |
TGGGTTAGTCTTGAAGAAGCTTGACAAAAAACTGGAAAGGACACTCCTACATTCATATCGTAAGgtatg--tacca-caccatgtcggtgtttctataacgttatgatctctcatca--ctgctttttatcccttcaatgatgatgttatctatgcttgcag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30251587|gb|CB969320.1|CB969320EST: AAAAGCTTGATAAGAAATTGGAAAGAACACTCCTGCATTCATATCGTAAG GATTTGACATCTCAAGTGTCTGCTGAAAGTGACCCTGTTTCCCTTCTACCA
genomic: AAAAGCTTGATAAGAAATTGGAAAGAACACTCCTGCATTCATATCGTAAGgtacacctac ... ccattatcagGATTTGACATCTCAAGTGTCTGCTGAAAGTGACCCTGTTTCCCTTCTACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGTTACTCTTGAAAAAGCTTGATAAGAAATTGGAAAGAACACTCCTGCATTCATATCGTAAGgtacacctactgtcaataattcaagataattgaactgttctcttcacaaataggtttgctttatttattattattattattattattattattatattta
- - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaatag