1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTACGGGCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtttgcagttcttattacatatatttagtctgaaacaaccaagaaaaaaaaactagtttaaaacaaaagaaacactatgaaaccctaggagcaatttttcagttgcttataatgtgaatcttttttgacttcaaaatttttgcag
species | Vitis vinifera |
transcript | Vv15s0021g02230.t01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|110702474|gb|EE081230.1|EE081230
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|26264285|gb|CA815348.1|CA815348
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTTTCAAG CATGGGACTGGATCTTTTAGAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|110732035|gb|EE106967.1|EE106967
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|110701345|gb|EE078813.1|EE078813
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCATACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|351017726|gb|FQ436079.1|FQ436079
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAATGAAGGCAGATAAGAACCATCTCTCAGG CATGGGACTGGATCTTTEST: gi|34545337|gb|CF513569.1|CF513569
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTT
EST: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|34545258|gb|CF513490.1|CF513490
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|32272417|gb|CD721576.1|CD721576
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAATGAAGGCAGATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|110688105|gb|EE066273.1|EE066273
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGGAATAACCTANAAGCTGGEST: gi|351026359|gb|FQ428371.1|FQ428371
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAATGAAGGCAGATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|30138039|gb|CB923377.1|CB923377
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAATGAAGGCAGATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|110371042|gb|EC934755.1|EC934755
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAATGAAGGCAGATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|161712591|gb|FC062193.1|FC062193
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAATGAAGGCATATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|26266195|gb|CA817258.1|CA817258
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTTTCAAG CATGGGACTGGATCTTTTAGAAGGAACTGTCCGTAATAACCTAGAAGCTGGEST: gi|110362101|gb|EC925611.1|EC925611
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
EST: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAG CATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
genomic: GCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtt ... atttttgcagCATGGGACTGGATCTTTTAAAAGGAACTGTCCGTAATAACCTAGAAGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTGTGAATGCTGCAAAAGACGCGACTGAATTAGTTGCAAAACTACGGGCTTACCACCACACTGCCCAAACGAAGGCAGATAAGAAGCATCTCTCAAGgtattctgtttgcagttcttattacatatatttagtctgaaacaaccaagaaaaaaaaactagtttaaaacaaaagaaacactatgaaaccctaggagcaatttttcagttgcttataatgtgaatcttttttgacttcaaaatttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC