Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTCCATTCAAAAAATTTGCATCTATGCGGGATGAGTGGGCTCTCAAGAATCAATACATCAGTCCTGgtaagctaccgctctttctactgcagggccttctccactctaatgaactttcatcagtgactgattgaatttgccttttaagtagaggacgagatgaatgccaaactgaaactttgaaagcttagtaaaaatttcaatttctgcttggagacaatctcttctactaacacaacactcttattgatttgattgcag

Basic information

species Vitis vinifera
transcript Vv10s0116g00360.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 15
GTGCTCCATTCAAAAAATTTGCATCTATGCGGGATGAGTGGGCTCTCAAGAATCAATACATCAGTCCTGgtaagctaccgctctttctactgcagggccttctccactctaatgaactttcatcagtgactgattgaatttgccttttaagtagaggacgagatgaatgccaaactgaaactttgaaagcttagtaaaaatttcaatttctgcttggagacaatctcttctactaacacaacactcttattgatttgattgcag
 ||| || ||||| |||| |||||| ||||| ||||||||||| ||||||||   ||||||||| ||||||| |        |   |    |||  |  |  |||| | || |       | | |||| |            ||    ||  | |      |   |||     |  |      ||| ||                                                                           
CTGCACCTTTCAAGAAATATGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcgaatgcaaccggtagcaatgt-tcatccagtttagt-------ctttagtgcccccccac-----ccccccaaaaaaaatgtttgtctaatat---atcgttgtcgtgacag---------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110419896|gb|EC986150.1|EC986150
EST:     TGCATCTATGCGGGATGAGTGGGCTCTCAAGAATCAATACATCAGTCCTG                         GTCCCATTCAATTTAATGGTCCTGCATCCAATGACGTAAATCACACTCTTC
genomic: TGCATCTATGCGGGATGAGTGGGCTCTCAAGAATCAATACATCAGTCCTGgtaagctacc ... ttgattgcagGTCCCATTCAATTTAATGGTCCTGCATCCAATGACGTAAATCACACTCTTC
EST: gi|110720557|gb|EE096583.1|EE096583
EST:     TGCATCTATGCGGGATGAGTGGGCTCTCAAGAATCAATACATCAGTCCTG                         GTCCCATTCAATTTAATGGTCCTGCATCCAATGACGTAAACCACACTCTTC
genomic: TGCATCTATGCGGGATGAGTGGGCTCTCAAGAATCAATACATCAGTCCTGgtaagctacc ... ttgattgcagGTCCCATTCAATTTAATGGTCCTGCATCCAATGACGTAAATCACACTCTTC