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GTTTCAATGAGCATGGCAATGCATGTAACTGCTCAAACTTTCTTGATGTAGACTGGCTTTCTTCATCTGGAAATTCATGTGAAGAAGAAACATATGAAAGgtaattatcatcctatcaaggaatgcatgttggtagtacccgttcagaagtccgaagaagagaaaactatggatgcttttcactaagggaataattaact...
species | Vitis vinifera |
transcript | Vv09s0002g00590.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AATTCATGTGAAGAAGAAACATATGAAAG GTCTAGTCTCATAAACTCTCCCATTCCTGGGCTGTCATCTGAGAGTGTTGTEST: gi|26257223|gb|CA808286.1|CA808286
genomic: AATTCATGTGAAGAAGAAACATATGAAAGgtaattatca ... atggctgcagGTCTAGTCTCATAAACTCTCCCATTCCTGGGCTGTCATCTGAGAGTGTTGT
EST: GACTGGCTTTCTTCATCTGGAAATTCATGTGAAGAAGAAACATATGAAAG GTCTAGTCTCATAAACTCTCCCATTCCTGGGCTGTCATCTGAGAGTGTTGTEST: gi|18459053|gb|BM437331.1|BM437331
genomic: GACTGGCTTTCTTCATCTGGAAATTCATGTGAAGAAGAAACATATGAAAGgtaattatca ... atggctgcagGTCTAGTCTCATAAACTCTCCCATTCCTGGGCTGTCATCTGAGAGTGTTGT
EST: GACTGGCTTTCTTCATCTGGAAATTCATGTGAAGAAGAAACATATGAAAG GTCTAGTCTCATAAACTCTCCCATTCCTGGGCTGTCATCTGAGAGTGTTGTEST: gi|32245229|gb|CD711048.1|CD711048
genomic: GACTGGCTTTCTTCATCTGGAAATTCATGTGAAGAAGAAACATATGAAAGgtaattatca ... atggctgcagGTCTAGTCTCATAAACTCTCCCATTCCTGGGCTGTCATCTGAGAGTGTTGT
EST: GACTGGCTTTCTTCATCTGGAAATTCATGTGAAGAAGAAACATATGAAAG GTCTAGTCTCATAAACTCTCCCATTCCTGGGCTGTCATCTGAGAGTGTTGTEST: gi|161706920|gb|FC057258.1|FC057258
genomic: GACTGGCTTTCTTCATCTGGAAATTCATGTGAAGAAGAAACATATGAAAGgtaattatca ... atggctgcagGTCTAGTCTCATAAACTCTCCCATTCCTGGGCTGTCATCTGAGAGTGTTGT
EST: GACTGGCTTTCTTCATCTGGAAATTCATGTGAAGAAGAAACATATGAAAG GTCTAGTCTCATAAACTCTCCCATTCCTGGGCTGTCATCTGAGAGTGTTGT
genomic: GACTGGCTTTCTTCATCTGGAAATTCATGTGAAGAAGAAACATATGAAAGgtaattatca ... atggctgcagGTCTAGTCTCATAAACTCTCCCATTCCTGGGCTGTCATCTGAGAGTGTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCAATGAGCATGGCAATGCATGTAACTGCTCAAACTTTCTTGATGTAGACTGGCTTTCTTCATCTGGAAATTCATGTGAAGAAGAAACATATGAAAGgtaattatcatcctatcaaggaatgcatgttggtagtacccgttcagaagtccgaagaagagaaaactatggatgcttttcactaagggaataattaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaataa